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nf-core / modules Public

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MarkDuplicates Input specificity and input refactor. #8118

Open

johnoooh wants to merge 13 commits intonf-core:masternf-core/modules:masterfrom

johnoooh:bugfix/prefix_fixesjohnoooh/modules:bugfix/prefix_fixesCopy head branch name to clipboard

Conversation Commits13 (13)Checks Files changed

Open

MarkDuplicates Input specificity and input refactor. #8118
johnoooh wants to merge 13 commits intonf-core:masterfrom
johnoooh:bugfix/prefix_fixes

Commits

Commits on Mar 26, 2025

Changes how the workflow determines if it should be bam or cram, and fixed input specificity.
Orgera
committed
removed debug lines
Orgera
committed
linting!
Orgera
committed
Merge branch 'master' into bugfix/prefix_fixes
johnoooh
authored
mark duplciates is currently having issues with conda, it passes in codespaces and in singularity/docker, but not conda.
Orgera
committed
Merge branch 'bugfix/prefix_fixes' of github.com:johnoooh/modules into bugfix/prefix_fixes
Orgera
committed
Merge branch 'nf-core:master' into bugfix/prefix_fixes
johnoooh
authored

Commits on Mar 27, 2025

main.nf update, chnaged hardcodedness
johnoooh
committed
Update meta.yml
johnoooh
committed

Commits on Mar 28, 2025

bam plugin test
johnoooh
committed
Merge branch 'bugfix/prefix_fixes' of github.com:johnoooh/modules into bugfix/prefix_fixes
johnoooh
committed
md fix, new test
johnoooh
committed
fixed test
johnoooh
committed

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