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Pull requests: nf-core/modules

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163 Open 5,763 Closed
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Pull requests list

Swap vrhyme/extractunbinned to nf-test nf-test Ready for Review
#8163 opened Mar 30, 2025 by SPPearce • Review required
2
stub and nf-test created for raxmlng nf-test
#8161 opened Mar 29, 2025 by bhargava-morampalli • Changes requested
3 of 17 tasks
1
@bhargava-morampalli
4
update propd new genewise
#8154 opened Mar 28, 2025 by caraiz2001 • Review required
17 tasks
1
Add metabuli/build module
#8148 opened Mar 27, 2025 by pawelciurkaardigen • Review required
17 tasks
1
Migrate HLALA_TYPING to nf-test nf-test
#8147 opened Mar 27, 2025 by LouisLeNezet • Draft
17 tasks
1
@LouisLeNezet
5
Metaspace download Ready for Review
#8145 opened Mar 26, 2025 by Dewey-Wang • Changes requested
9 of 17 tasks
1
@Dewey-Wang
12
add ctatsplicing/prepgenomelib
#8144 opened Mar 26, 2025 by anoronh4 • Draft
17 tasks
🚀 first commit to add ARACNe3 module
#8143 opened Mar 26, 2025 by stikos • Draft
11 of 17 tasks
1
@stikos
1
🤹🏻 subworkflow for protein activity virtual estimation using aracne and viper
#8141 opened Mar 26, 2025 by juanesarango • Draft
7 of 17 tasks
1
add gcta/gsmr tool
#8140 opened Mar 26, 2025 by juliaapolonio • Review required
12 of 17 tasks
16
🚀 Merge new viper module
#8137 opened Mar 26, 2025 by ddomenico • Draft
11 of 17 tasks
1
nf-test migration: plink/indeppairwise
#8133 opened Mar 26, 2025 by mantisps • Changes requested
17 tasks
1
20
add module integronfinder
#8131 opened Mar 26, 2025 by nguyent-son • Changes requested
10 of 17 tasks
22
Update kraken2
#8130 opened Mar 26, 2025 by jaimeozaez • Review required
4 of 17 tasks
@jaimeozaez
Update clipseq module peka from version 1.0.0 to 1.0.2 draft
#8127 opened Mar 26, 2025 by neusmf • Review required
17 tasks
@CharlotteAnne
1
New module: imagesegmentationmetrics
#8125 opened Mar 26, 2025 by BioinfoTongLI • Review required
12 of 14 tasks
1
Rework FastqScreen enhancement New feature or request nf-test
#8124 opened Mar 26, 2025 by kedhammar • Draft
17 tasks
@Aratz @kedhammar
my code keeps say error, even on the lines i didnt do anything awaiting-feedback will be closed after 30 days
#8122 opened Mar 26, 2025 by LauraGiacM
1
gatk4/selectvariants: Update documentation and module improvements #7907
#8121 opened Mar 26, 2025 by Alveen-o • Changes requested
17 tasks
@Alveen-o
18
Sentieon nftest #7689
#8119 opened Mar 26, 2025 by gpattarone • Review required
17 tasks
1
MarkDuplicates Input specificity and input refactor.
#8118 opened Mar 26, 2025 by johnoooh • Changes requested
9 of 17 tasks
6
ADDORREPLACEREADGROUPS and MERGEBAMALIGNMENT input/output file specificity fix.
#8115 opened Mar 26, 2025 by johnoooh • Changes requested
17 tasks
7
Updated STAR version within the RSEM module (#8108)
#8110 opened Mar 26, 2025 by delagoya • Review required
12 tasks done
1
1
new module starfusion build Ready for Review
#8107 opened Mar 26, 2025 by martings • Review required
17 tasks
@martings @alanmmobbs93
@sofiromano @delfiterradas
11
Add new module mcstaging/macsima2mc for mcmicro
#8101 opened Mar 26, 2025 by EfraMP • Review required
9 of 17 tasks
1
@kubranarci
10
ProTip! Updated in the last three days: updated:>2025-03-28.