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Pull requests: nf-core/modules

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188 Open 8,640 Closed
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Pull requests list

add pixi env size/s
#12165 opened Jun 25, 2026 by matthdsm Contributor Loading…
17 tasks
7
added fungtion modules (download models + run) size/l
#12160 opened Jun 24, 2026 by vagkaratzas Contributor Loading…
17 tasks
Modules : add kled
#12159 opened Jun 24, 2026 by tetedange13 Contributor Loading…
11 of 14 tasks
1
add DotMatch modules
#12156 opened Jun 23, 2026 by dnncha • Draft
feat: mako module
#12155 opened Jun 23, 2026 by emmcauley Contributor Loading…
10 of 17 tasks
1
2
Fix: Update Cellranger/multi to reinclude functionality from previous PR update size/m
#12152 opened Jun 23, 2026 by mahesh-panchal Member Loading…
1 of 17 tasks
3
style: add publication metadata to multiqcsav module
#12151 opened Jun 23, 2026 by maxulysse Member Loading…
Fix flag logic in caddsv-get Ready for Review size/s
#12150 opened Jun 23, 2026 by manascripts Member Loading…
11 of 17 tasks
style: add publication metadata to multiqc module
#12149 opened Jun 23, 2026 by maxulysse Member Loading…
style: add publication metadata to fastqe module
#12148 opened Jun 23, 2026 by maxulysse Member Loading…
style: add publication metadata to fastp module
#12147 opened Jun 23, 2026 by maxulysse Member Loading…
style: add publication metadata to checkqc module
#12146 opened Jun 23, 2026 by maxulysse Member Loading…
style: add publication metadata to sequali module
#12145 opened Jun 23, 2026 by maxulysse Member Loading…
style: add publication metadata to all seqkit modules
#12144 opened Jun 23, 2026 by maxulysse Member Loading…
style: add publication metadata to all samtools modules
#12143 opened Jun 23, 2026 by maxulysse Member Loading…
Added Cram_qc_mosdepth_samtools to nf core subworkflows size/m
#12137 opened Jun 23, 2026 by agrima2010 Loading…
17 tasks
5
new module numorph-3dunet
#12130 opened Jun 22, 2026 by CaroAMN Contributor Loading…
2 of 17 tasks
1
5
New modules Gprofiler2/gconvert
#12128 opened Jun 22, 2026 by Schansiate Loading…
14 of 17 tasks
1
Add hmftools/amber module
#12123 opened Jun 22, 2026 by JP-Bro Contributor Loading…
1
1
Add wisecondorx/convert module
#12122 opened Jun 22, 2026 by JP-Bro Contributor Loading…
1
docs: Add module-level docstring to barcodes.py
#12119 opened Jun 22, 2026 by Lang-Qiu • Draft
Varscan topic size/m
#12038 opened Jun 18, 2026 by SPPearce Contributor Loading…
6
Add AGENTS.md
#12028 opened Jun 17, 2026 by itrujnara Contributor Loading…
1 task done
10
add-new-tool: rami2d/register and rami2d/transform imaging new module Adding a new module
#12027 opened Jun 17, 2026 by kubranarci Contributor Loading…
6 of 17 tasks
@kubranarci
5
Readd dataset version extraction
#12026 opened Jun 17, 2026 by ammaraziz Contributor Loading…
2 tasks done
11
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