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Pull requests: nf-core/modules

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Pull requests list

Update VCFLIB to topics
#10307 opened Mar 2, 2026 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
feat(cellpose): update to v4.0.8 with GPU support
#10306 opened Mar 2, 2026 by an-altosian • Draft
1
[GH-7778] Added matlock/bam2juicer
#10305 opened Mar 2, 2026 by GallVp Loading…
1 of 17 tasks
1
new process: picard/samtofastq
#10298 opened Mar 2, 2026 by kelly-sovacool • Draft
9 of 13 tasks
1
12
fix: a few purge_dups tweaks
#10297 opened Mar 2, 2026 by prototaxites Loading…
3 of 17 tasks
chore(deps): update dotnet monorepo to v10 (major) size/xs
#10294 opened Mar 2, 2026 by renovate bot Loading…
2 tasks
Add new module sentieoncli/dnascopelongread
#10292 opened Mar 2, 2026 by alkc • Draft
22 tasks
1
update CADD version to 1.7.3 Ready for Review
#10290 opened Mar 1, 2026 by ramprasadn Loading…
17 tasks
chore(deps): update quay.io/biocontainers/antismash docker tag to v8.0.4 size/xs
#10289 opened Mar 1, 2026 by renovate bot Loading…
2 tasks
chore(deps): pin quay.io/biocontainers/antismash docker tag to 9977bae size/xs
#10287 opened Mar 1, 2026 by renovate bot Loading…
2 tasks
adding kmergenie module
#10281 opened Feb 27, 2026 by LiaOb21 Loading…
12 of 17 tasks
1
6
chore(modules): migrate adapterremoval & adapterremovalfixprefix to new version output format
#10266 opened Feb 25, 2026 by maxcumminsandfred-lab Loading…
3 of 17 tasks
chore(modules): migrate abricate/summary to new version output format
#10265 opened Feb 25, 2026 by maxcumminsandfred-lab Loading…
2 of 17 tasks
3
chore(modules): migrate abricate/run to new version output format
#10264 opened Feb 25, 2026 by maxcumminsandfred-lab Loading…
3 of 17 tasks
3
module update: subread/featurecounts - Bump container versions #10249
#10250 opened Feb 25, 2026 by PeterKneale Loading…
5 tasks done
1
6
Rmats work in progress PR
#10128 opened Feb 23, 2026 by akaviaLab • Draft
1 of 17 tasks
2
Integrate multiqcsav into bcl_demultiplex subworkflow size/m
#10117 opened Feb 19, 2026 by delfiterradas • Draft
17 tasks
1
@delfiterradas
4
Paraphase update
#10099 opened Feb 18, 2026 by bagnacan Loading…
3 tasks done
4
Add MacSyFinder modules for model management and protein system detection size/l size/xl
#10074 opened Feb 17, 2026 by Copilot AI • Draft
1
@brovolia
18
Migrate hmtnote to topic versions
#10062 opened Feb 16, 2026 by emmadizdarevic • Draft
17 tasks
Fix labeler workflow for fork PRs using workflow_run pattern
#10045 opened Feb 16, 2026 by Copilot AI • Draft
@ewels
7
Deacon index set operations
#10027 opened Feb 13, 2026 by pmoris Loading…
17 tasks
2
DO NOT MERGE: clean repo, and more strict syntax fixes
#10016 opened Feb 13, 2026 by maxulysse • Draft
17 tasks
1
New module: lsa/cosine (calculate cosine similarity)
#10002 opened Feb 12, 2026 by miguelrosell Loading…
12 tasks done
27
give bwamem2/index a makeover
#9997 opened Feb 12, 2026 by maxulysse Loading…
17 tasks
5
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