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Multi-omics Network Analytics Group

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  1. course_protein_language_modeling course_protein_language_modeling Public

    HTML 39 10

  2. vuegen vuegen Public

    VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply …

    Python 26

  3. MicW2Graph MicW2Graph Public

    A knowledge graph of the wastewater treatment microbiome and its biological context

    HTML 4

  4. pubmed-rag pubmed-rag Public

    A playground for RAG development from pubmed API

    Jupyter Notebook 4 1

  5. vuecore vuecore Public

    Python package for creating interactive and static visualizations of multi-omics data

    Python 2

  6. course_synthetic_biology_data course_synthetic_biology_data Public

    Slides for lecture "Leveraging existing biological data and making sense of it" part of DTU's Summer School on Synthetic Biology for Cell Factories

    2

Repositories

Showing 10 of 25 repositories
  • acore Public

    Functionality to preprocess and analyse multi-omics data

    Multiomics-Analytics-Group/acore’s past year of commit activity
    Python 0 1 14 2 Updated Sep 2, 2025
  • MicW2Graph Public

    A knowledge graph of the wastewater treatment microbiome and its biological context

    Multiomics-Analytics-Group/MicW2Graph’s past year of commit activity
    HTML 4 MIT 0 0 0 Updated Sep 1, 2025
  • InstaNexus Public
    Multiomics-Analytics-Group/InstaNexus’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Sep 1, 2025
  • vuecore Public

    Python package for creating interactive and static visualizations of multi-omics data

    Multiomics-Analytics-Group/vuecore’s past year of commit activity
    Python 2 0 5 2 Updated Aug 26, 2025
  • vuegen Public

    VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report.

    Multiomics-Analytics-Group/vuegen’s past year of commit activity
    Python 26 0 33 1 Updated Aug 25, 2025
  • abaco Public

    Batch Effect Correction framework for metagenomic data

    Multiomics-Analytics-Group/abaco’s past year of commit activity
    Python 2 0 0 0 Updated Aug 25, 2025
  • nf-vuegen Public

    nf-core module designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. VueGen creates reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.

    Multiomics-Analytics-Group/nf-vuegen’s past year of commit activity
    Nextflow 2 MIT 0 0 0 Updated Aug 21, 2025
  • airbiome_microb_asso_net_report Public

    This repository contains a summary of the main results for the microbial association networks from the AirBiome project. The reports were generated using VueGen, a tool to automate the creation of scientific reports.

    Multiomics-Analytics-Group/airbiome_microb_asso_net_report’s past year of commit activity
    HTML 0 0 0 0 Updated Aug 19, 2025
  • airbiome Public

    R and Python scripts to perform microbial network analysis of the AirBiome project, from data preprocessing to network comparisons and metadata correlations.

    Multiomics-Analytics-Group/airbiome’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 18, 2025
  • course_protein_language_modeling Public
    Multiomics-Analytics-Group/course_protein_language_modeling’s past year of commit activity
    HTML 39 Apache-2.0 10 2 1 Updated Aug 12, 2025
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