Multi-omics Network Analytics Group

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19 repositories

acore
Public
Statistical functions to analyse multi-omics data
Python
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Other
•0•0•9•3•Updated Feb 2, 2025Feb 2, 2025
vuegen
Public
Automating the creation of scientific reports
reports
Python
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MIT License
•0•1•4•2•Updated Jan 31, 2025Jan 31, 2025
vuecore
Public
Visualization library for omics data
Python
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MIT License
•0•1•1•0•Updated Jan 31, 2025Jan 31, 2025
FermentDB
Public
FermentDB: A Database for High-cell Density Fermentations
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Jan 29, 2025Jan 29, 2025
ckg
Public
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
Jupyter Notebook
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MIT License
•103•1•0•0•Updated Jan 21, 2025Jan 21, 2025
multiomics-analytics-group.github.io
Public
MoNA Group Website
HTML
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Other
•4k•0•0•0•Updated Jan 17, 2025Jan 17, 2025
course_graph_machine_learning
Public
This is part of an AI course
Jupyter Notebook
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GNU General Public License v3.0
•1•0•0•0•Updated Jan 13, 2025Jan 13, 2025
course_protein_language_modeling
Public
education machine-learning course slides protein-sequences
Jupyter Notebook
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Apache License 2.0
•7•30•0•0•Updated Jan 10, 2025Jan 10, 2025
pubmed-rag
Public
A playground for RAG development from pubmed API
Jupyter Notebook
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MIT License
•1•3•0•0•Updated Dec 20, 2024Dec 20, 2024
networks_to_study_microbes
Public
education course slides notebooks-jupyter
Jupyter Notebook
•1•0•0•0•Updated Nov 21, 2024Nov 21, 2024
MicW2Graph
Public
A knowledge graph of the wastewater treatment microbiome and its biological context
metagenomics knowledge-graph network-biology wastewater-treatment biolink-model streamlit-webapp
HTML
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MIT License
•0•4•0•0•Updated Oct 24, 2024Oct 24, 2024
course_synthetic_biology_data
Public
Slides for lecture "Leveraging existing biological data and making sense of it" part of DTU's Summer School on Synthetic Biology for Cell Factories
education course slides
Apache License 2.0
•0•2•0•0•Updated Jun 24, 2024Jun 24, 2024
OrthoHPI2.0
Public
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Jun 7, 2024Jun 7, 2024
Microbial_network_inference_and_analysis_MicW2Graph
Public
A repository with scripts to infer and analyze microbial association networks for the MicW2Graph project
Python
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MIT License
•0•0•0•0•Updated Jun 4, 2024Jun 4, 2024
Retrieve_info_MGnifyAPI
Public
Scripts to get information from MGnify programmatically using its API
Jupyter Notebook
•0•0•1•0•Updated Feb 20, 2024Feb 20, 2024
cfb_data_club
Public
0•0•0•0•Updated May 10, 2023May 10, 2023
orthohpi
Public
JavaScript
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MIT License
•0•0•0•0•Updated Aug 6, 2021Aug 6, 2021
PythonTsunami
Public
education course slides notebook-jupyter
Jupyter Notebook
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MIT License
•16•0•0•0•Updated Jun 9, 2021Jun 9, 2021
triqler
Public
The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
Python
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Apache License 2.0
•11•0•0•0•Updated May 4, 2020May 4, 2020