Filter out Manta-sSV

uclahs-cds · yashpatel6 · Feb 6, 2025 · Jan 28, 2025 · Jan 28, 2025 · Jan 28, 2025
commit 946965504bbf0e4b027b8bc0d6a5ece3815b57f9
diff --git a/module/StableLift/workflow.nf b/module/StableLift/workflow.nf
@@ -27,7 +27,7 @@ workflow stable_lift {
                             return;
                         }
                         s_data["call-${mode}"].each { tool, data ->
-                            if (['BCFtools-Intersect', 'Manta-gSV'].contains(tool)) {
+                            if (['BCFtools-Intersect', 'Manta-gSV', 'Manta-sSV'].contains(tool)) {
                                 return;
                             }
                             samples.add([