SV Liftover Code #240
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SV Liftover Code #240
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Adding code for output identification for SV pipelines and passing to StableLift pipeline for liftover.
The SV liftover options are currently disabled since StableLift expects a VCF and currently the SV pipelines output BCF. Once VCF output is added to the SV pipelines, the liftover can be enabled.
Much of the code in the output identification workflows is repetitive and should/will be separated into a single function in a future PR.