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1. single-cell-best-practices single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 1k 238

2. scvelo scvelo Public

   RNA Velocity generalized through dynamical modeling

   Python 471 111

3. cellrank cellrank Public

   CellRank: dynamics from multi-view single-cell data

   Python 405 51

4. scarches scarches Public

   Reference mapping for single-cell genomics

   Jupyter Notebook 387 64

5. scib scib Public

   Benchmarking analysis of data integration tools

   Python 391 73

6. ehrapy ehrapy Public

   Electronic Health Record Analysis with Python.

   Python 310 36