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  1. laminlabs/lamindb laminlabs/lamindb Public

    A data framework for biology. Makes your data queryable, traceable, reproducible, and FAIR. One API: lakehouse, lineage, feature store, ontologies, LIMS, ELN.

    Python 203 16

  2. scverse/anndata scverse/anndata Public

    Annotated data.

    Python 680 177

  3. scverse/scanpy scverse/scanpy Public

    Single-cell analysis in Python. Scales to >100M cells.

    Python 2.2k 675

  4. theislab/scarches theislab/scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 387 64

  5. theislab/intercode theislab/intercode Public

    Jupyter Notebook 6 1