update CI #8
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| name: "build" | |
| on: | |
| push: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v1 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GHCR_TOKEN }} | |
| - name: Pull pre-built Docker image | |
| run: docker pull ghcr.io/${{ github.repository }}:latest | |
| - name: Install Nextflow | |
| uses: stracquadaniolab/[email protected] | |
| - name: Cache Nextflow dependencies | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.HOME }}/.nextflow | |
| key: ${{ runner.os }}-nextflow-${{ hashFiles('nextflow.config') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nextflow- | |
| - name: Test Nextflow pipeline | |
| run: | | |
| docker run --rm \ | |
| -v ${{ github.workspace }}:/workspace \ | |
| -w /workspace \ | |
| ghcr.io/${{ github.repository }}:latest \ | |
| nextflow run . -profile test,ci,docker | |
| - name: Push image to GitHub Container Registry | |
| if: startsWith(github.event.ref, 'refs/tags') | |
| uses: docker/build-push-action@v2 | |
| with: | |
| context: . | |
| file: containers/Dockerfile | |
| platforms: linux/amd64 | |
| push: true | |
| tags: | | |
| ghcr.io/${{ github.repository }}:v0.0.10, ghcr.io/${{ github.repository }}:latest |