update CI

.github/workflows/ci.yml

@@ -10,38 +10,15 @@ jobs:
       - name: Checkout repository
         uses: actions/checkout@v2
 
-      - name: Set up QEMU
-        uses: docker/setup-qemu-action@v1
-
-      - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@v1
-
       - name: Login to GitHub Container Registry
         uses: docker/login-action@v1
         with:
           registry: ghcr.io
           username: ${{ github.repository_owner }}
           password: ${{ secrets.GHCR_TOKEN }}
 
-      - name: Cache Docker layers
-        uses: actions/cache@v2
-        with:
-          path: /tmp/.buildx-cache
-          key: ${{ runner.os }}-docker-${{ hashFiles('containers/Dockerfile') }}
-          restore-keys: |
-            ${{ runner.os }}-docker-
-
-      - name: Build Docker image
-        uses: docker/build-push-action@v2
-        with:
-          context: .
-          file: containers/Dockerfile
-          platforms: linux/amd64
-          cache-from: type=local,src=/tmp/.buildx-cache
-          load: true
-          push: false
-          tags: |
-            ghcr.io/${{ github.repository }}:v0.0.10, ghcr.io/${{ github.repository }}:latest
+      - name: Pull pre-built Docker image
+        run: docker pull ghcr.io/${{ github.repository }}:latest
 
       - name: Install Nextflow
         uses: stracquadaniolab/[email protected]
@@ -56,7 +33,10 @@ jobs:
 
       - name: Test Nextflow pipeline
         run: |
-          chmod +x bin/*
+          docker run --rm \
+          -v ${{ github.workspace }}:/workspace \
+          -w /workspace \
+          ghcr.io/${{ github.repository }}:latest \
           nextflow run . -profile test,ci,docker
 
       - name: Push image to GitHub Container Registry