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combineasy and the DiseasyEnsemble class #1782

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combineasy and the DiseasyEnsemble class

combineasy and the DiseasyEnsemble class #1782

Triggered via pull request February 7, 2025 22:30
@RasmusSkytteRasmusSkytte
opened #166
feature/combineasy
Status Failure
Total duration 24m 2s
Artifacts 7

all-workflows.yaml

on: pull_request
⚙️ Context
0s
⚙️ Context
⚙️ Dispatch  /  ⚙️ Determine downstream workflow triggers
4s
⚙️ Dispatch / ⚙️ Determine downstream workflow triggers
⚙️ Dispatch  /  ...  /  🛠️ Store dependency versions
1m 58s
⚙️ Dispatch / update-lockfile / 🛠️ Store dependency versions
⚙️ Dispatch  /  🐞 Inspect trigger output
0s
⚙️ Dispatch / 🐞 Inspect trigger output
⚙️ Dispatch  /  ...  /  📖 Document
1m 42s
⚙️ Dispatch / document / 📖 Document
⚙️ Dispatch  /  ...  /  📖 README
1m 0s
⚙️ Dispatch / render-readme / 📖 README
⚙️ Dispatch  /  ...  /  📖 pkgdown: Build
6m 16s
⚙️ Dispatch / pkgdown / 📖 pkgdown: Build
⚙️ Dispatch  /  ...  /  🔎 Check: Build package
3m 55s
⚙️ Dispatch / R-CMD-check / 🔎 Check: Build package
Matrix: run-all-AEF-DFF-workflows / code-coverage / code-coverage-sqlite
⚙️ Dispatch  /  ...  /  🧪 Tests: DuckDB
7m 5s
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
⚙️ Dispatch  /  ...  /  🧪 Tests: PostgreSQL
6m 44s
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
⚙️ Dispatch  /  ...  /  🧪 Tests: SQL Server 2022
7m 15s
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
⚙️ Dispatch  /  ...  /  🖋️ Lint
2m 39s
⚙️ Dispatch / lint / 🖋️ Lint
⚙️ Dispatch  /  ...  /  🔠 Spelling
58s
⚙️ Dispatch / spell-checker / 🔠 Spelling
⚙️ Dispatch  /  ...  /  🔍 pkgdown: Determine if pre-release
2s
⚙️ Dispatch / pkgdown / 🔍 pkgdown: Determine if pre-release
⚙️ Dispatch  /  ...  /  🔎 Check: ubuntu (release, no dependencies)
4m 3s
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
⚙️ Dispatch  /  ...  /  🔎 Check: ubuntu (r-devel)
15m 34s
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (r-devel)
⚙️ Dispatch  /  ...  /  🔎 Check: ubuntu (R v4.3.0)
12m 5s
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
Matrix: run-all-AEF-DFF-workflows / R-CMD-check / R-CMD-check
⚙️ Dispatch  /  ...  /  🧪 Tests: Upload to codecov.io
0s
⚙️ Dispatch / code-coverage / 🧪 Tests: Upload to codecov.io
⚙️ Dispatch  /  ...  /  🧼 pkgdown: Clean up
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⚙️ Dispatch / pkgdown / 🧼 pkgdown: Clean up
⚙️ Dispatch  /  ...  /  🚀 pkgdown: Deploy
0s
⚙️ Dispatch / pkgdown / 🚀 pkgdown: Deploy
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Annotations

56 errors and 2 warnings
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite - w. schemas
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQLite
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: PostgreSQL
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: DuckDB
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Process completed with exit code 1.
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
running the tests in ‘testthat.R’ failed
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Failure in `/home/runner/work/_temp/package/diseasy/diseasy-tests/testthat.Rout.fail`
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Test failures
⚙️ Dispatch / code-coverage / 🧪 Tests: SQL Server 2022
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
Running examples in ‘diseasy-Ex.R’ failed
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
No such keg: /opt/homebrew/Cellar/[email protected]
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
processing vignette 'creating-ensembles.Rmd' failed with diagnostics:
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
Vignette re-building failed.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
Test failures
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release, no dependencies)
Test failures
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release)
Running examples in ‘diseasy-Ex.R’ failed
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (release)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (oldrel-1)
Running examples in ‘diseasy-Ex.R’ failed
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (oldrel-1)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (oldrel-1)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: windows (release)
Running examples in 'diseasy-Ex.R' failed
⚙️ Dispatch / R-CMD-check / 🔎 Check: windows (release)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: windows (release)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
Running examples in ‘diseasy-Ex.R’ failed
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
R CMD check found ERRORs
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
Test failures
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
Process completed with exit code 1.
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
Test failures
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (R v4.3.0)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
⚙️ Dispatch / R-CMD-check / 🔎 Check: ubuntu (r-devel)
Canceling since a higher priority waiting request for 'R-CMD-check-feature/combineasy' exists
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf
⚙️ Dispatch / R-CMD-check / 🔎 Check: macos (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!

Artifacts

Produced during runtime
Name Size Digest
Linux-X64-r-0-results
11.4 MB
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Linux-X64-roldrel-1-3-results
8.17 MB
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Linux-X64-rrelease-2-results
8.13 MB
sha256:25e134339f68558883cdd3dae49a6500c8acf9907b38d4eef8fa166a27846348
Windows-X64-rrelease-1-results
6.65 MB
sha256:45ae513f74dfeb599064af392734a245e085daec6186b29025b2469c327ce75d
macOS-ARM64-rrelease-0-results
8.17 MB
sha256:e1986a1c66f03d41e8e2a2b581eaede1049c58f9805fbaaac0c744b803f59bef
package-tarball
2.37 MB
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pkgdown
4.99 MB
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