nf-core/pacvar is a bioinformatics pipeline that processes long-read PacBio data. Specifically, the pipeline provides two workflows: one for processing whole-genome sequencing data, and another for processing reads from the PureTarget expansion panel offered by PacBio.
- Aligns raw BAM files, sorts and Indexes
- Variant calls (with GATK or Deepvariant)
- For repeat Regions - characterizes number of motifs and produces waterfall plots
Full Changelog: v1.0.0...1.0.0