v1.0.0 - Goldfish [2/05/2025]

nf-core/pacvar is a bioinformatics pipeline that processes long-read PacBio data. Specifically, the pipeline provides two workflows: one for processing whole-genome sequencing data, and another for processing reads from the PureTarget expansion panel offered by PacBio.

• Aligns raw BAM files, sorts and Indexes
• Variant calls (with GATK or Deepvariant)
• For repeat Regions - characterizes number of motifs and produces waterfall plots

Full Changelog: v1.0.0...1.0.0