🤹🏻 subworkflow for protein activity virtual estimation using aracne and viper

[juanesarango]

Subworkflow for proposed modules: (viper + ARACNe3) + a subworkflow to infer protein activity from the abundance of gene expression of regulatory transcription factors and other components that are involved in how a protein ends up being activated. The understanding of these tissue-specific protein activity mechanisms become very valuable for precision medicine where specific proteins can be targeted by known drugs.

Slack Discussion:

https://nfcore.slack.com/archives/CJRH30T6V/p1743012526710529

Dependencies to be merged before:

• PR for ARACNe module: 🚀 first commit to add ARACNe3 module #8143
• PR for viper module: 🚀 Merge new viper module #8137
• PR for test-data: add test data for the aracne3 and viper module test-datasets#1568

PR checklist

Closes #7992

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the module conventions in the contribution docs
• If necessary, include test data in your PR.
• Remove all TODO statements.
• Emit the versions.yml file.
• Follow the naming conventions.
• Follow the parameters requirements.
• Follow the input/output options guidelines.
• Add a resource label
• Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • nf-core modules test <MODULE> --profile docker
    • nf-core modules test <MODULE> --profile singularity
    • nf-core modules test <MODULE> --profile conda
  • For subworkflows:
    • nf-core subworkflows test <SUBWORKFLOW> --profile docker
    • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
    • nf-core subworkflows test <SUBWORKFLOW> --profile conda