add DotMatch modules#12156
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What this adds
Adds nf-core module candidates for DotMatch 0.1.8:
dotmatch/countdotmatch/crispr_countdotmatch/demuxdotmatch/auditdotmatch/panel_checkdotmatch/assay_runEach module includes
main.nf,meta.yml, anenvironment.ymlpinned tobioconda::dotmatch=0.1.8, and tiny nf-test fixtures copied from the DotMatch repository workflow examples.Why
DotMatch provides deterministic fixed-window known-target short-DNA assignment for CRISPR guides, inline barcodes, panel checks, and related QC workflows. The module set is intended to make the tool easier to adopt from nf-core pipelines while preserving explicit
unique,ambiguous,none, andinvalidassignment semantics.Validation
make repository-ready,make test,make workflow-examples-ready,make assay-evidence-ready,make scientific-readiness-ready,make barcode-comparison-gate,make native-exact-gate,make distribution-record-ready,make bioconda-recipe-ready, andmake joss-paper-ready.nf-core modules lintor nf-test locally because this workstation does not have Java/Nextflow installed. I installednf-corein an isolated venv and confirmed lint stops on missingnextflowbefore module-specific checks.Review notes
This is opened as a draft because upstream maintainers may prefer splitting the six DotMatch subcommands into separate PRs and may want regenerated nf-test snapshots under the current nf-core tooling.