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style: add publication metadata to all samtools modules#12143

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maxulysse:style-harvard-author-samtools-v2
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style: add publication metadata to all samtools modules#12143
maxulysse wants to merge 2 commits into
nf-core:masterfrom
maxulysse:style-harvard-author-samtools-v2

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Add Harvard-style publication metadata to all 35 samtools modules for consistent citation formatting.

Changes:

  • Added publication object with author, year, title, and source fields
  • Added doi field where missing
  • Author format: Li H., Handsaker B., Wysoker A., Fennell T., Ruan J., Homer N., Marth G., Abecasis G., Durbin R., 1000 Genome Project Data Processing Subgroup (Harvard style)

Files updated (35 total):

  • modules/nf-core/samtools/addreplacerg/meta.yml
  • modules/nf-core/samtools/ampliconclip/meta.yml
  • modules/nf-core/samtools/bam2fq/meta.yml
  • modules/nf-core/samtools/bedcov/meta.yml
  • modules/nf-core/samtools/bgzip/meta.yml
  • modules/nf-core/samtools/calmd/meta.yml
  • modules/nf-core/samtools/cat/meta.yml
  • modules/nf-core/samtools/collate/meta.yml
  • modules/nf-core/samtools/collatefastq/meta.yml
  • modules/nf-core/samtools/consensus/meta.yml
  • modules/nf-core/samtools/convert/meta.yml
  • modules/nf-core/samtools/coverage/meta.yml
  • modules/nf-core/samtools/cramsize/meta.yml
  • modules/nf-core/samtools/depth/meta.yml
  • modules/nf-core/samtools/dict/meta.yml
  • modules/nf-core/samtools/faidx/meta.yml
  • modules/nf-core/samtools/fasta/meta.yml
  • modules/nf-core/samtools/fastq/meta.yml
  • modules/nf-core/samtools/fixmate/meta.yml
  • modules/nf-core/samtools/flagstat/meta.yml
  • modules/nf-core/samtools/getrg/meta.yml
  • modules/nf-core/samtools/idxstats/meta.yml
  • modules/nf-core/samtools/import/meta.yml
  • modules/nf-core/samtools/index/meta.yml
  • modules/nf-core/samtools/markdup/meta.yml
  • modules/nf-core/samtools/merge/meta.yml
  • modules/nf-core/samtools/mpileup/meta.yml
  • modules/nf-core/samtools/quickcheck/meta.yml
  • modules/nf-core/samtools/reheader/meta.yml
  • modules/nf-core/samtools/samples/meta.yml
  • modules/nf-core/samtools/sormadup/meta.yml
  • modules/nf-core/samtools/sort/meta.yml
  • modules/nf-core/samtools/splitheader/meta.yml
  • modules/nf-core/samtools/stats/meta.yml
  • modules/nf-core/samtools/view/meta.yml

Reference: Harvard citation style

Add Harvard-style publication metadata to all 35 samtools modules:
- author: Li H., Handsaker B., Wysoker A., Fennell T., Ruan J., Homer N., Marth G., Abecasis G., Durbin R., 1000 Genome Project Data Processing Subgroup
- year: 2009
- title: The Sequence Alignment/Map format and SAMtools
- source: Bioinformatics

This ensures consistent citation formatting across all samtools modules.
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