Merge branch 'master' into varscan_topic

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Graphite / mergeability_check

Run when nf-test-gpu tests are skipped on: pull_request

check-files

confirm-pass-gpu

labeler on: pull_request

Label the PR size

Run when nf-test tests are skipped on: pull_request

check-files

confirm-pass-nf-test

Run GPU nf-tests on: pull_request

nf-test-changes

GPU Test | g4dn.xlarge | ${{ matrix.profile }} | ${{ matrix.shard }}

GPU Test | g4dn.2xlarge | ${{ matrix.profile }} | ${{ matrix.shard }}

confirm-pass-gpu

Run nf-test on: pull_request

nf-test-changes

x64 | conda | 1

x64 | docker | 1

x64 | singularity | 1

x64 | conda | 2

x64 | docker | 2

x64 | singularity | 2

x64 | conda | 3

x64 | docker | 3

x64 | singularity | 3

x64 | conda | 4

x64 | docker | 4

x64 | singularity | 4

x64 | conda | 5

x64 | docker | 5

x64 | singularity | 5

x64 | conda | 6

x64 | docker | 6

x64 | singularity | 6

confirm-pass-nf-test

Run Linting on: pull_request

pre-commit

nf-core-changes

nf-core lint modules (varscan/fpfilter)

nf-core lint modules (varscan/processsomatic)

nf-core lint modules (varscan/somatic)

nf-core lint subworkflows

confirm-pass-lint

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