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update CADD version to 1.7.3#10290

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ramprasadn merged 10 commits intonf-core:masterfrom
ramprasadn:caddupdate
Mar 3, 2026
Merged

update CADD version to 1.7.3#10290
ramprasadn merged 10 commits intonf-core:masterfrom
ramprasadn:caddupdate

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PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
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  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
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@ramprasadn ramprasadn closed this Mar 1, 2026
@ramprasadn ramprasadn reopened this Mar 1, 2026
@ramprasadn ramprasadn marked this pull request as ready for review March 2, 2026 12:36
['singularity', 'apptainer'].contains(workflow.containerEngine) ?
"-B ${annotation_dir}:/opt/CADD-scripts-1.6.post1/data/annotations" :
"-v ${annotation_dir}:/opt/CADD-scripts-1.6.post1/data/annotations" }"
container 'docker.io/clinicalgenomics/cadd-with-scripts:1.7.3'
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Was there an issue with the official docker://visze/cadd-scripts-v1_7:0.1.1?

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Yeah, that only contains the environments, not the actual CADD-scripts package.

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Updated the container to incorporate @mashehu's comments from https://nfcore.slack.com/archives/CJRH30T6V/p1772367520618609

@ramprasadn ramprasadn added this pull request to the merge queue Mar 3, 2026
Merged via the queue into nf-core:master with commit 64ab14a Mar 3, 2026
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@ramprasadn ramprasadn deleted the caddupdate branch March 3, 2026 12:25
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3 participants