chore(modules): migrate adapterremoval & adapterremovalfixprefix to new version output format#10266
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Migrated module to use topic channels for version outputs. Files changed: - modules/nf-core/adapterremoval/main.nf - modules/nf-core/adapterremoval/meta.yml - modules/nf-core/adapterremoval/tests/main.nf.test - modules/nf-core/adapterremoval/tests/main.nf.test.snap Generated by nfcore-migrate-versions skill (ClawHub pending).
maxcumminsandfred-lab
changed the title
maxcumminsandfred-lab
changed the title
| { assert snapshot( | ||
| process.out, | ||
| path(process.out.versions[0]).yaml | ||
| process.out.findAll { key, val -> key.startsWith('versions') }[0] |
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Don't need this when you have the whole of process.out
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Just a general note: could you mark this account clearer as a bot account (e.g. adding it as a github app to get the correct label or at least adding |
Co-authored-by: Simon Pearce <24893913+SPPearce@users.noreply.github.com>
Co-authored-by: Simon Pearce <24893913+SPPearce@users.noreply.github.com>
The changes were pushed to a fork by a bot. The PRs themselves were created manually - I had planned to curate and then request review when they were ready for review. Next time for manual curation I will just PR against my own fork to review changes before PR to nf-core Still testing out the bot on the CLI-side. In any case, I have changed the name of this account to include [bot] but its not an app at this point (nor technically a bot) |
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Can't update snapshots locally due to ARM architecture seemingly not liking deacon container. Tried tagging Full command not detailed here for regular snapshot updates, only other snapshot types - https://nf-co.re/docs/contributing/github/nf-core-bot |
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because this bot action doesn't exist (yet) for this repo. you can use github codespaces to update snapshots with a x86 machine |
3 participants
Migrated module to use topic channels for version outputs.
Generated by nfcore-migrate-versions skill (ClawHub pending).
PR checklist
Closes #XXX
topic: versions- See version_topicslabelnf-core modules test <MODULE> --profile dockernf-core modules test <MODULE> --profile singularitynf-core modules test <MODULE> --profile condanf-core subworkflows test <SUBWORKFLOW> --profile dockernf-core subworkflows test <SUBWORKFLOW> --profile singularitynf-core subworkflows test <SUBWORKFLOW> --profile conda