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Add MacSyFinder modules for model management and protein system detection#10074

Draft

Copilot wants to merge 11 commits intomasternf-core/modules:masterfrom

copilot/add-macsyfinder-modulenf-core/modules:copilot/add-macsyfinder-moduleCopy head branch name to clipboard

Conversation Commits11 (11)Checks Files changed

Draft

Add MacSyFinder modules for model management and protein system detection#10074
Copilot wants to merge 11 commits intomasterfrom
copilot/add-macsyfinder-module

Commits

Commits on Feb 27, 2026

Initial plan

Copilot
authored and
brovolia
committed
Add MacSyFinder modules: download and search

Copilot
and
brovolia
committed
Improve macsyfinder modules: fix output directory structure

Copilot
and
brovolia
committed
Fix stub mode to create all output files

Copilot
and
brovolia
committed
Improve documentation and fix file pattern

Copilot
and
brovolia
committed
Fix macsyfinder modules: correct msf_data version extraction and meta.yml structure
brovolia
committed
Fix macsyfinder/search tests: snapshot filenames only to avoid unstable HMMER output
brovolia
committed
Address reviewer feedback
brovolia
committed
capture stdout/stderr with tee and remove empty error files
brovolia
committed
update snapshot format to single match call
brovolia
committed
update snapshots to filename-only format
brovolia
committed

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