Adding TArrow for testing #220
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ziw-liu
reviewed
Jan 29, 2025
…s to clarify metrics. fixing docstrings to be numpy style
ziw-liu
added
enhancement
viscy/data/tarrow.py
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| from tarrow.data.tarrow_dataset import TarrowDataset | ||
| from torch.utils.data import ConcatDataset, DataLoader | ||
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| from viscy.utils.engine_state import set_fit_global_state |
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viscy.utils.engine_state doesn't exist. Missing commit?
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@edyoshikun I was able to draw a batch and construct the model! For any meaningful comparison with dynaCLR, we will need a downstream embedding model:
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This PR adds the Tarrow package wrapped with lightning. It also contains a DataLoader to get the pair of timepoints from ome-zarr.