Releases: laminlabs/bionty
Releases · laminlabs/bionty
Release 1.0.0
See https://docs.lamin.ai/changelog
What's Changed
- 🏗️ Integrate
lnschema-core
intolamindb
by @falexwolf in #177 - 🍱 New
Disease
version:mondo
-2024-08-06
by @Zethson in #182 - 🍱 New
CellType
version:cl
-2024-08-16
by @Zethson in #183 - ✨ Upgrade Ruff and mypy by @Zethson in #184
- 🚚 Migrate to lamindb 1.0 by @falexwolf in #178
- 🚚 Deprecate the
--schema
argument oflamin init
in favor of--modules
by @falexwolf in #185 - 🚚 Rename
FeatureSet
toSchema
and migrate to lamindb 1.0a5 by @falexwolf in #186
Full Changelog: 0.53.2...1.0.0
Release 1.0a1
See https://docs.lamin.ai/changelog
What's Changed
- 🏗️ Integrate
lnschema-core
intolamindb
by @falexwolf in #177 - 🍱 New
Disease
version:mondo
-2024-08-06
by @Zethson in #182 - 🍱 New
CellType
version:cl
-2024-08-16
by @Zethson in #183 - ✨ Upgrade Ruff and mypy by @Zethson in #184
- 🚚 Migrate to lamindb 1.0 by @falexwolf in #178
Full Changelog: 0.53.2...1.0a1
Release 0.53.2
See https://docs.lamin.ai/changelog
What's Changed
- 🎨 Make search consistent with the lamindb implementation by @Koncopd in #170
- 🎨 Simplify coupling to
lamindb_setup
by @falexwolf in #171
New Contributors
Full Changelog: 0.53.1...0.53.2
Release 0.53.1
See https://docs.lamin.ai/changelog
What's Changed
- 🔊 Raise error if organism can't be created from bionty by @sunnyosun in #167
- ✨ Reintroduce taxa by @Zethson in #168
Full Changelog: 0.53.0...0.53.1
Release 0.53.0
See https://docs.lamin.ai/changelog
What's Changed
- 📝 Add symbol mapping FAQ reference to Gene by @Zethson in #149
- ✅ Clean up test properly by @Zethson in #161
- 🎨 Use field defaults by @sunnyosun in #158
- 🎨 Squash migrations by @sunnyosun in #162
- ✨ Support
taxa="plants"
inEnsemblGene
by @mossjacob in #153 - 🎨 Polish code by @Zethson in #164
- ✨Add support for local source files by @mossjacob in #156
New Contributors
- @mossjacob made their first contribution in #153
Full Changelog: 0.52.1...0.53.0
Release 0.52.1
See https://docs.lamin.ai/changelog
What's Changed
- 🐛 Hide from_public from TOC by @Zethson in #135
- 🎨 Proper deprecation warning by @Zethson in #138
- 🎨 Raise
OrganismNotSet
instead ofAssertionError
whenorganism
is not set by @Zethson in #144 - ✨ Add field support for bionty base by @Zethson in #146
- 📝 Fix keep docstring standardize gene by @Zethson in #148
- 🎨 Rename import_from_source by @Zethson in #150
Full Changelog: 0.52.0...0.52.1
Release 0.52.0
See https://docs.lamin.ai/changelog
What's Changed
- 📝 More consistent and simpler docs by @falexwolf in #127
- 🎨 Remove update in add_ontology_from_df by @sunnyosun in #129
- 🔥 Remove
.list_source()
by @sunnyosun in #130 - 🚚 Add unique constraints and fix
gene_ref_is_symbol
tolabel_ref_is_name
by @falexwolf in #133
Full Changelog: 0.51.2...0.52.0
Release 0.51.2
Release 0.51.1
See https://docs.lamin.ai/changelog
Full Changelog: 0.51.0...0.51.1
Release 0.51.0
See https://docs.lamin.ai/changelog
What's Changed
- 📝 Improve map_legacy_ids docs by @Zethson in #120
- 📝 Fix bulk create ref by @Zethson in #121
- 🎨 Do not require organism if field is ontology_ud or uid by @sunnyosun in #122
- ⚡ Lazy reload of module upon
ln.connect()
by @falexwolf in #123
Full Changelog: 0.50.2...0.51.0