Release 1.2a1

See https://docs.lamin.ai/changelog

What's Changed

• ♻️ Make add_source independent of the bionty-assets instance by @sunnyosun in #211
• 🧪 Test sources by @sunnyosun in #212
• 📝 Remove deprecated methods, updated examples by @sunnyosun in #213
• 🔥 Make EFO parsing the same as other ontologies by @sunnyosun in #214
• ♻️ Refactor default source configuration by @sunnyosun in #215
• ♻️ Refactor import_source by @sunnyosun in #216
• 🔥 Remove local source yaml files by @sunnyosun in #217
• 🔥 Clean up base docs by @sunnyosun in #218
• ♻️ Refactor sync_public_sources by @sunnyosun in #221
• ✨ Support custom source by @sunnyosun in #222
• 🐛 Fix source fetching by @sunnyosun in #224
• ➖ Remove pronto from main dependencies by @Zethson in #220
• ✨ Enable ontology upgrade by @sunnyosun in #223
• 📝 Document import_source better by @sunnyosun in #225
• 📝 Update docstring of sync_public_sources by @sunnyosun in #226

Full Changelog: 1.1.2...1.2a1

Release 1.1.2

See https://docs.lamin.ai/changelog

What's Changed

• 📝 Fix docs by @Koncopd in #209

Full Changelog: 1.1.1...1.1.2

Release 1.1.1

See https://docs.lamin.ai/changelog

What's Changed

• 🎨 Improve from_source docstrings for entities by @falexwolf in #192
• ✨ Unpin pronto by @Zethson in #108
• 🎨 Remove md5 related code by @Zethson in #201
• 🍱 New ExperimentalFactor version: efo-3.69.0 by @Zethson in #203
• 🐛 Fix tissue docstring by @Zethson in #204
• 🐛 Fix import_source edge cases by @Zethson in #205
• 🎨 Standardize organism scientific names by @sunnyosun in #208

Full Changelog: 1.1.0...1.1.1

Release 1.1.0

See https://docs.lamin.ai/changelog

What's Changed

• ♻️ Create backward accessors on SchemaFeature link models by @falexwolf in #188
• ♻️ Port simplified deprecation strategy by @falexwolf in #189
• ♻️ Squash migrations by @falexwolf in #187
• ♻️ Point to new squashed migration by @falexwolf in #191
• ♻️ Increase uid length for Source to 8 chars by @falexwolf in #193
• 🍱 Adjust migration to 8-char Source uid by @falexwolf in #194
• ♻️ Add data migration for source uids by @falexwolf in #196
• ♻️ Resquash migrations by @falexwolf in #197

Full Changelog: 1.0.0...1.1.0

Release 1.0.0

See https://docs.lamin.ai/changelog

What's Changed

• 🏗️ Integrate lnschema-core into lamindb by @falexwolf in #177
• 🍱 New Disease version: mondo-2024-08-06 by @Zethson in #182
• 🍱 New CellType version: cl-2024-08-16 by @Zethson in #183
• ✨ Upgrade Ruff and mypy by @Zethson in #184
• 🚚 Migrate to lamindb 1.0 by @falexwolf in #178
• 🚚 Deprecate the --schema argument of lamin init in favor of --modules by @falexwolf in #185
• 🚚 Rename FeatureSet to Schema and migrate to lamindb 1.0a5 by @falexwolf in #186

Full Changelog: 0.53.2...1.0.0

Release 1.0a1

See https://docs.lamin.ai/changelog

What's Changed

• 🏗️ Integrate lnschema-core into lamindb by @falexwolf in #177
• 🍱 New Disease version: mondo-2024-08-06 by @Zethson in #182
• 🍱 New CellType version: cl-2024-08-16 by @Zethson in #183
• ✨ Upgrade Ruff and mypy by @Zethson in #184
• 🚚 Migrate to lamindb 1.0 by @falexwolf in #178

Full Changelog: 0.53.2...1.0a1

Release 0.53.2

See https://docs.lamin.ai/changelog

What's Changed

• 🎨 Make search consistent with the lamindb implementation by @Koncopd in #170
• 🎨 Simplify coupling to lamindb_setup by @falexwolf in #171

New Contributors

• @Koncopd made their first contribution in #170

Full Changelog: 0.53.1...0.53.2

Release 0.53.1

See https://docs.lamin.ai/changelog

What's Changed

• 🔊 Raise error if organism can't be created from bionty by @sunnyosun in #167
• ✨ Reintroduce taxa by @Zethson in #168

Full Changelog: 0.53.0...0.53.1

Release 0.53.0

See https://docs.lamin.ai/changelog

What's Changed

• 📝 Add symbol mapping FAQ reference to Gene by @Zethson in #149
• ✅ Clean up test properly by @Zethson in #161
• 🎨 Use field defaults by @sunnyosun in #158
• 🎨 Squash migrations by @sunnyosun in #162
• ✨ Support taxa="plants" in EnsemblGene by @mossjacob in #153
• 🎨 Polish code by @Zethson in #164
• ✨Add support for local source files by @mossjacob in #156

New Contributors

• @mossjacob made their first contribution in #153

Full Changelog: 0.52.1...0.53.0

Release 0.52.1

See https://docs.lamin.ai/changelog

What's Changed

• 🐛 Hide from_public from TOC by @Zethson in #135
• 🎨 Proper deprecation warning by @Zethson in #138
• 🎨 Raise OrganismNotSet instead of AssertionError when organism is not set by @Zethson in #144
• ✨ Add field support for bionty base by @Zethson in #146
• 📝 Fix keep docstring standardize gene by @Zethson in #148
• 🎨 Rename import_from_source by @Zethson in #150

Full Changelog: 0.52.0...0.52.1