KFDRC Germline Structural Variant Workflow

KFDRC Germline Structural Variant Workflow

The primary focus of this release if the creation of a preliminary Germline Structural Sariant (SV) workflow. The workflow is runs two callers: Manta and SVaba. Both callers report two VCFs: one containing the smaller indels and another reporting the larger structural variations. Records from the latter files that can be annotated are done so by AnnotSV and reported in separate TSVs.

What's Changed

• 🎉 added vcf2parquet tool by @migbro in #19
• Feature/mb add sommalier by @migbro in #20
• 🔧 germline sv update by @dmiller15 in #21
• 📚 germline sv release prep by @dmiller15 in #22

New Contributors

• @migbro made their first contribution in #19

Full Changelog: v0.2.0...v0.3.0