Update funannotate #6774
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Update funannotate #6774
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bernt-matthias
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Feb 18, 2025
- add homepage_url - fix branch
since value is yyyy-mm-dd always the oldest entry will be the first, i.e. the default
for reproducibility. we could also make this an extra tool.
from a funannotate DB
This was referenced Feb 19, 2025
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bernt-matthias
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bgruening
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Feb 26, 2025
| #else | ||
| --database '$database.fields.path' | ||
| #end if | ||
| --database "$db_path" |
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| --database "$db_path" | |
| --database '$db_path' |
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We can not use single quotes here, since the shell expansion (of '$(pwd)/hacked_database') does not work otherwise.
| #if $parameters: | ||
| --parameters '${parameters}' | ||
| #end if | ||
| ## #if $parameters: |
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The parameters would only be useful if we would create such a parameter file. But the corresponding output (abinitio) is commented out.
Co-authored-by: Björn Grüning <[email protected]>
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data manager(s):
funannotate setuptools:
funannotate databasein all tools using a DB .. then there is some detailed info on the used DB on stdout (could also be a separate tool?)--parametersfrom predict (see also TODO comment in outputs)and some more but minor changes.
FOR CONTRIBUTOR: