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Pull requests: galaxyproject/tools-iuc

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Pull requests list

Mash sketch - fix paired data
#7323 opened Oct 1, 2025 by Delphine-L Loading…
5 tasks
feat: Add cawlign Galaxy tool wrapper
#7322 opened Sep 30, 2025 by spond Loading…
3 of 5 tasks
Seqkit Split2 patch for mishandling of paired collection VGP Tools required for VGP
#7320 opened Sep 30, 2025 by SaimMomin12 Loading…
3 of 5 tasks
Adding a new tool: read2tree
#7318 opened Sep 30, 2025 by nromashchenko Loading…
3 of 5 tasks
Add regex switch expression tool
#7314 opened Sep 29, 2025 by npinter Loading…
3 of 5 tasks
5
Updating tools/beacon2 from version 2.0.0 to 2.0.5
#7311 opened Sep 29, 2025 by gxydevbot Loading…
Hyphy tool updates (2.5.81)
#7310 opened Sep 26, 2025 by spond Loading…
3 of 5 tasks
2
Adds wrapper features for Multiqc to support mosdepth
#7309 opened Sep 26, 2025 by bwlang • Draft
3 of 5 tasks
3
Quast: Correct some default values and fix krona output condition
#7308 opened Sep 26, 2025 by RZ9082 Loading…
2 of 5 tasks
2
New Addition: ripples and general update to latest version of usher
#7306 opened Sep 25, 2025 by lsterck Loading…
4 of 5 tasks
6
New tool addition: Samestr2
#7304 opened Sep 25, 2025 by xens25 • Draft
5 tasks
Add tool to detect circular sequences
#7296 opened Sep 22, 2025 by bebatut Loading…
3 of 5 tasks
12
Enable selection of compatible SnpEff DBs
#7295 opened Sep 22, 2025 by wm75 Loading…
2 of 5 tasks
2
add COMEBin utility script
#7285 opened Sep 18, 2025 by SantaMcCloud Loading…
3 of 5 tasks
7
Updating tools/fermikit from version r193 to r204
#7273 opened Sep 15, 2025 by gxydevbot Loading…
Add required_files to addName
#7264 opened Sep 8, 2025 by natefoo Loading…
5 tasks
4
Add MaAsLin3
#7263 opened Sep 8, 2025 by SantaMcCloud Loading…
3 of 5 tasks
12
Update kraken2 and add support for custom databases
#7257 opened Sep 4, 2025 by pvanheus Loading…
3 of 5 tasks
15
Updating tools/trimmomatic from version 0.39 to 0.40
#7253 opened Sep 1, 2025 by gxydevbot Loading…
Updating tools/freyja from version 2.0.0 to 2.0.1
#7251 opened Sep 1, 2025 by gxydevbot Loading…
1
Updating tools/biom_format from version 2.1.15 to 2.1.17
#7250 opened Sep 1, 2025 by gxydevbot Loading…
autocycler suit
#7247 opened Aug 27, 2025 by mthang Loading…
3 of 5 tasks
24
Bump version to ena webin cli v9.0.1 + scaffold and chromosome level assembly support
#7243 opened Aug 26, 2025 by bedroesb Loading…
4 of 8 tasks
4
bakta, fix for local DB usage
#7241 opened Aug 25, 2025 by lsterck Loading…
3 of 5 tasks
6
Updating tools/nanocomp from version 1.25.3 to 1.25.4
#7238 opened Aug 25, 2025 by gxydevbot Loading…
3
ProTip! What’s not been updated in a month: updated:<2025-09-01.