fix multigsea db parameter

allowing to select all and additional dbs seems to make no sense
galaxyproject · Feb 27, 2025 · be57ac9 · be57ac9
1 parent c6d65d9
commit be57ac9
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diff --git a/tools/multigsea/macros.xml b/tools/multigsea/macros.xml
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.12.0</token>
-    <token name="@SUFFIX_VERSION@">0</token>
+    <token name="@SUFFIX_VERSION@">1</token>
     <token name="@PROFILE@">20.05</token>
     <xml name="requirements">
         <requirements>

diff --git a/tools/multigsea/multigsea.xml b/tools/multigsea/multigsea.xml
@@ -101,15 +101,14 @@
             <option value="dmelanogaster">Drosophila melanogaster (Fruit fly)</option>
             <option value="celegans">Caenorabditis elegans (Roundworm)</option>
         </param>
-        <param name="databases" type="select" multiple="true" label="Pathway databases" help="Available pathway databases">
-            <option value="all" selected="true">All available databases</option>
-            <option value="kegg">KEGG</option>
-            <option value="reactome">REACTOME</option>
-	    <option value="wikipathways">WIKIPATHWAYS</option>
-	    <option value="pathbank">PATHBANK</option>
-	    <option value="smpdb">SMPDB (Human only)</option>
-	    <option value="panther">PANTHER (Human only)</option>
-	    <option value="pharmgkb">PHARMGKB (Human only)</option>
+        <param name="databases" type="select" multiple="true" optional="false" label="Pathway databases" help="Available pathway databases">
+            <option value="kegg" selected="true">KEGG</option>
+            <option value="reactome" selected="true">REACTOME</option>
+	        <option value="wikipathways" selected="true">WIKIPATHWAYS</option>
+	        <option value="pathbank" selected="true">PATHBANK</option>
+	        <option value="smpdb">SMPDB (Human only)</option>
+	        <option value="panther">PANTHER (Human only)</option>
+	        <option value="pharmgkb">PHARMGKB (Human only)</option>
         </param>
         <param name="combine_pvalues" type="select" label="Combine p-values method" help="It specifies the method to combine multiple p-values ">
             <option value="stouffer">Stouffer</option>