Merge pull request #6806 from hugolefeuvre/update_starAMR

Update starAMR
galaxyproject · Feb 27, 2025 · 9688e26 · 9688e26
2 parents c6d65d9 + 0f8ef53
commit 9688e26
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/tools/staramr/staramr_search.xml b/tools/staramr/staramr_search.xml
@@ -2,7 +2,7 @@
     <description>Scans genome assemblies against the ResFinder, PlasmidFinder, and PointFinder databases searching for AMR genes</description>
     <macros>
         <token name="@TOOL_VERSION@">0.11.0</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
         <token name="@PROFILE@">22.05</token>
         <xml name="element_assert" token_name="" token_text="">
             <element name="@NAME@">
@@ -98,9 +98,9 @@ $advanced.exclude_resistance_phenotypes
     --pointfinder-organism '${pointfinder_organism}'
 #end if
 
-$named_genomes &&
+$named_genomes
 #if str($hide_db_build) == 'true':
-    rm -r resfinder_d1e607b_pointfinder_694919f_plasmidfinder_3e77502
+    && rm -r resfinder_d1e607b_pointfinder_694919f_plasmidfinder_3e77502
 #end if
     ]]></command>
     <inputs>