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@fdarthen fdarthen released this 05 Oct 11:29
· 169 commits to main since this release
v0.5.3
581fe6b
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Learn about vigilant mode.

added possibility to select different source types in GFF for reading
new config parameter gff_source -> options:

  • default (reads all gene, mRNA and CDS features)
  • maker (reads gene and mRNA features from source 'maker', gene-protein linking via ID/Parent matching in mRNA feature)
  • augustus_masked (reads match features from source 'augustus_masked', gene-protein linking via Name and ID attributes in match feature)
  • path to parsing rule file (see information required in Wiki [coming soon])

reordering and renaming of some config parameters:

  • tax_id -> taxon_id
  • nr_db_path -> database_path
  • only_plotting -> update_plots
  • reads_1, reads_2, reads_un -> merged into 'reads' (see information on this in Wiki [coming soon])
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