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Deployment fixes #13

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merged 2 commits into from
Nov 24, 2024
Merged

Deployment fixes #13

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a82f7a1
Fix swagger.yml
nictru Nov 24, 2024
7d63594
Fix connexion installation
nictru Nov 24, 2024
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2 changes: 1 addition & 1 deletion requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ certifi==2024.8.30
chardet==5.2.0
click==8.1.3
clickclick==1.2.2
connexion==3.1.0
connexion[flask]==3.1.0
flask-cors==4.0.0
flask-marshmallow==1.2.1
flask-sqlalchemy==3.1.1
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48 changes: 24 additions & 24 deletions swagger.yml
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Expand Up @@ -2582,7 +2582,7 @@ paths:
items:
properties:
comparison_ID:
type: int
type: integer
description: Id of the selected comparison.
condition_1:
type: string
Expand Down Expand Up @@ -2616,10 +2616,10 @@ paths:
type: string
description: Abbreviation of the disease.
total_number_samples:
type: int
type: integer
description: Number of samples in the dataset.
version:
type: int
type: integer
description: SPONGEdb version that the dataset belongs to.
dataset_2:
type: object
Expand All @@ -2644,10 +2644,10 @@ paths:
type: string
description: Abbreviation of the disease.
total_number_samples:
type: int
type: integer
description: Number of samples in the dataset.
version:
type: int
type: integer
description: SPONGEdb version that the dataset belongs to.

/gseaSets:
Expand Down Expand Up @@ -2835,22 +2835,22 @@ paths:
items:
properties:
es:
type: float
type: number
description: Enrichment Score.
nes:
type: float
type: number
description: Normalised Enrichment Score.
pvalue:
type: float
type: number
description: P-Value of GSEA result.
fdr:
type: float
type: number
description: P-Value after false discovery rate control
fwerp:
type: float
type: number
description: P-Value after family wise error rate control
gene_percent:
type: float
type: number
description: Gene Percent.
tag_percent:
type: string
Expand All @@ -2875,7 +2875,7 @@ paths:
type: integer
description: Id of the score within the gsea result, creates an order for the scores.
score:
type: float
type: number
description: Value of the score.

/gseaPlot:
Expand Down Expand Up @@ -3022,22 +3022,22 @@ paths:
type: string
description: Gene Symbol.
baseMean:
type: float
type: number
description: Differential Expression Base Mean.
log2FoldChange:
type: float
type: number
description: Log2 Fold Change between gene expressions.
pvalue:
type: float
type: number
description: P-Value for change between gene expressions.
padj:
type: float
type: number
description: P-Value adjusted for multiple testing problem.
stat:
type: float
type: number
description: Differential Expression Statistic.
lfcSE:
type: float
type: number
description: Standard Error of Log Fold Change.

/differentialExpressionTranscript:
Expand Down Expand Up @@ -3110,20 +3110,20 @@ paths:
type: string
description: ENST number of transcript.
baseMean:
type: float
type: number
description: Differential Expression Base Mean.
log2FoldChange:
type: float
type: number
description: Log2 Fold Change between gene expressions.
pvalue:
type: float
type: number
description: P-Value for change between gene expressions.
padj:
type: float
type: number
description: P-Value adjusted for multiple testing problem.
stat:
type: float
type: number
description: Differential Expression Statistic.
lfcSE:
type: float
type: number
description: Standard Error of Log Fold Change.
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