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Data Science in Systems Biology

The research group Data Science in Systems Biology at the School of Life Sciences, Technical University of Munich

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  1. data-leakage-ppi-prediction data-leakage-ppi-prediction Public

    Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'

    C++ 22 1

  2. OpenLabFramework OpenLabFramework Public archive

    A open source framework for research data management. DEMO at https://dockerhts.compbio.sdu.dk/OpenLabFramework/login/auth

    JavaScript 21 6

  3. NEASE NEASE Public

    A network-based approach for exon set enrichment

    Python 15 2

  4. TF-Prioritizer TF-Prioritizer Public

    Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data

    Java 13

  5. SPONGE SPONGE Public

    Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference

    R 11 9

  6. DIGGER DIGGER Public

    Exploring Isoform-specific interactions

    Python 11 3

Repositories

Showing 10 of 91 repositories
  • drevalpy Public

    DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.

    daisybio/drevalpy’s past year of commit activity
    Python 6 GPL-3.0 1 20 (1 issue needs help) 2 Updated Jan 31, 2025
  • SPONGE-web-backend Public
    daisybio/SPONGE-web-backend’s past year of commit activity
    Python 0 GPL-3.0 0 0 6 Updated Jan 30, 2025
  • DIGGER Public

    Exploring Isoform-specific interactions

    daisybio/DIGGER’s past year of commit activity
    Python 11 GPL-3.0 3 3 2 Updated Jan 30, 2025
  • SPONGE-web-frontend Public
    daisybio/SPONGE-web-frontend’s past year of commit activity
    TypeScript 0 0 0 1 Updated Jan 29, 2025
  • namco Public
    daisybio/namco’s past year of commit activity
    R 10 GPL-3.0 3 24 0 Updated Jan 28, 2025
  • PRONE.Shiny Public

    Code of the R Shiny App of the PRONE R Package.

    daisybio/PRONE.Shiny’s past year of commit activity
    R 1 GPL-3.0 0 1 0 Updated Jan 28, 2025
  • PRONE.Evaluation Public
    daisybio/PRONE.Evaluation’s past year of commit activity
    R 0 0 0 0 Updated Jan 28, 2025
  • PRONE Public

    R Package for preprocessing, normalizing, and analyzing proteomics data

    daisybio/PRONE’s past year of commit activity
    R 2 GPL-3.0 1 0 0 Updated Jan 28, 2025
  • DIGGER_development Public Forked from daisybio/DIGGER

    Fork for developing new versions of DIGGER

    daisybio/DIGGER_development’s past year of commit activity
    Python 0 GPL-3.0 3 3 (1 issue needs help) 0 Updated Jan 27, 2025
  • NEASE Public

    A network-based approach for exon set enrichment

    daisybio/NEASE’s past year of commit activity
    Python 15 GPL-3.0 2 0 0 Updated Jan 27, 2025
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