Merge pull request #43 from daisybio/modules

Update docker-publish.yml
daisybio · Dec 19, 2024 · ee056f4 · ee056f4
2 parents 78ce47b + a6200ad
commit ee056f4
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Showing 2 changed files with 4 additions and 14 deletions.
diff --git a/app/models.py b/app/models.py
@@ -1067,7 +1067,7 @@ class Meta:
                   'mean_gini_decrease',
                   'mean_accuracy_decrease']
 
-    transcript = ma.Nested(lambda: TranscriptSchema(only=("transcript_ID", "enst_number")))
+    transcript = ma.Nested(lambda: TranscriptSchema(only=("enst_number", )))
 
 
 class SpongEffectsTranscriptModuleMembersSchema(ma.SQLAlchemyAutoSchema):
@@ -1079,7 +1079,7 @@ class Meta:
                   'spongEffects_transcript_module_ID',
                    'transcript']
 
-    transcript = ma.Nested(lambda: TranscriptSchema(only=("transcript_ID", "enst_number")))
+    transcript = ma.Nested(lambda: TranscriptSchema(only=("enst_number", )))
 
 
 class DESchema(ma.SQLAlchemyAutoSchema):

diff --git a/swagger.yml b/swagger.yml
@@ -6,6 +6,8 @@ info:
 servers:
   - url: /sponge-api
     description: Main (production) server
+  - url: /sponge-api-dev
+    description: Internal staging server for testing
 components:
   parameters:
     VersionParam:
@@ -3846,9 +3848,6 @@ paths:
                     type: object
                     description: Information about the gene.
                     properties:
-                      gene_ID: 
-                        type: integer
-                        description: Internal database ID of the gene.
                       ensg_number:
                         type: string
                         description: Ensg number of the gene.
@@ -3918,9 +3917,6 @@ paths:
                     type: object
                     description: Information about the gene.
                     properties:
-                      gene_ID: 
-                        type: integer
-                        description: Internal database ID of the gene.
                       ensg_number:
                         type: string
                         description: Ensg number of the gene.
@@ -4002,9 +3998,6 @@ paths:
                     type: object
                     description: Information about the transcript.
                     properties:
-                      transcript_ID:
-                        type: integer
-                        description: Internal database ID of the transcript.
                       enst_number:
                         type: string
                         description: Enst number of the transcript.
@@ -4089,9 +4082,6 @@ paths:
                     type: object
                     description: Information about the transcript.
                     properties:
-                      transcript_ID:
-                        type: integer
-                        description: Internal database ID of the transcript.
                       enst_number:
                         type: string
                         description: Enst number of the transcript.