Data Science in Systems Biology

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91 repositories

drevalpy
Public
DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.
bioinformatics machine drug-response-prediction
Python
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GNU General Public License v3.0
•1•6•20•2•Updated Jan 31, 2025Jan 31, 2025
SPONGE-web-backend
Public
Python
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GNU General Public License v3.0
•0•0•0•6•Updated Jan 30, 2025Jan 30, 2025
DIGGER
Public
Exploring Isoform-specific interactions
visualization django-application webtool protein-protein-interaction bioinformatics-tool
Python
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GNU General Public License v3.0
•3•11•3•2•Updated Jan 30, 2025Jan 30, 2025
SPONGE-web-frontend
Public
TypeScript
•0•0•0•1•Updated Jan 29, 2025Jan 29, 2025
namco
Public
R
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GNU General Public License v3.0
•3•10•24•0•Updated Jan 28, 2025Jan 28, 2025
PRONE.Shiny
Public
Code of the R Shiny App of the PRONE R Package.
shinyapps normalization proteomics-data-analysis
R
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GNU General Public License v3.0
•0•1•1•0•Updated Jan 28, 2025Jan 28, 2025
PRONE.Evaluation
Public
R
•0•0•0•0•Updated Jan 28, 2025Jan 28, 2025
PRONE
Public
R Package for preprocessing, normalizing, and analyzing proteomics data
evaluation data-analysis proteomics normalization
R
•
GNU General Public License v3.0
•1•2•0•0•Updated Jan 28, 2025Jan 28, 2025
DIGGER_development
Public
Fork for developing new versions of DIGGER
Python
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GNU General Public License v3.0
•3•0•3•0•Updated Jan 27, 2025Jan 27, 2025
NEASE
Public
A network-based approach for exon set enrichment
rna-seq statistics alternative-splicing network-analysis transcriptomics protein-protein-interaction bioinformatics-tool
Python
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GNU General Public License v3.0
•2•15•0•0•Updated Jan 27, 2025Jan 27, 2025
platlas
Public
A platelet atlas
R
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GNU General Public License v3.0
•0•0•27•1•Updated Jan 24, 2025Jan 24, 2025
Tangram_Refinement_Strategies
Public
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jan 23, 2025Jan 23, 2025
PPI_prediction_study
Public
Python
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MIT License
•0•5•0•0•Updated Jan 23, 2025Jan 23, 2025
RPs_MPs
Public
R
•0•1•0•0•Updated Jan 14, 2025Jan 14, 2025
Dimmer
Public
Java
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GNU General Public License v3.0
•1•0•0•2•Updated Jan 14, 2025Jan 14, 2025
NeEDL
Public
C++
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GNU General Public License v3.0
•1•4•5•3•Updated Jan 13, 2025Jan 13, 2025
spongeWebPy
Public
Python
•0•0•0•3•Updated Dec 17, 2024Dec 17, 2024
SPONGE-web-R
Public
R
•0•0•0•0•Updated Dec 11, 2024Dec 11, 2024
DysRegNet_package
Public
Inferring patient-specific regulatory alterations
bioinformatics rna-seq statistics systems-biology transcriptomics linear-models gene-regulatory-network
Jupyter Notebook
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GNU General Public License v3.0
•2•2•0•0•Updated Dec 6, 2024Dec 6, 2024
easyLiftover
Public
This repository wraps the pyliftover package to provide an option for lifting over common bioinformatics file types.
bioinformatics bioinformatics-tool
Python
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GNU General Public License v3.0
•0•0•2•2•Updated Nov 22, 2024Nov 22, 2024
teff-treg-satb1-analysis
Public
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Nov 13, 2024Nov 13, 2024
IHEC-AS
Public
R
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GNU General Public License v3.0
•1•0•0•0•Updated Nov 8, 2024Nov 8, 2024
cyanus
Public
A Systematic Comparison of Differential Analysis Methods for CyTOF Data & CYANUS App
R
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GNU General Public License v3.0
•2•4•8•0•Updated Oct 23, 2024Oct 23, 2024
polyester
Public
R
•1•0•0•0•Updated Oct 8, 2024Oct 8, 2024
CIRCEST-downstream
Public
R
•0•0•0•0•Updated Sep 18, 2024Sep 18, 2024
DysRegNet_workflow
Public
Python
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GNU General Public License v3.0
•1•0•0•0•Updated Aug 29, 2024Aug 29, 2024
CADDIE-backend
Public
Python
•1•0•0•0•Updated Aug 16, 2024Aug 16, 2024
BiCoN
Public
Network Constrained Biclustering PyPI package
Python
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GNU General Public License v3.0
•4•10•0•1•Updated Aug 9, 2024Aug 9, 2024
SPONGE
Public
Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference
R
•9•11•3•1•Updated Aug 6, 2024Aug 6, 2024
Ex-Breast-Cancer-Survival
Public
Jupyter Notebook
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GNU General Public License v3.0
•0•1•0•0•Updated Jul 25, 2024Jul 25, 2024