1.6.2

Add a command line option to output linearised (unwrapped) fasta files, --linearise-fasta

What's Changed

• 1.6.2 PR [closes #160] by @BioWilko in #161

Full Changelog: v1.6.1...v1.6.2

1.6.1

What's Changed

• 1.6.1 Update [fixes #155] by @BioWilko in #157

Full Changelog: v1.6.0...v1.6.1

1.6.0

Fieldbioinformatics now supports segmented viruses and amplicon panels.

What's Changed

• Add support for segmented genomes / amplicon panels by @BioWilko in #146

Full Changelog: v1.5.8...v1.6.0

1.5.8

Add Seqtk dependency

Full Changelog: v1.5.7...v1.5.8

1.5.7

Update which adds functionality to pick the most appropriate reference for multi reference primer schemes.

What's Changed

• Add reference selection functionality for multiref schemes (currently only artic-inrb-mpox) by @BioWilko in #147

Full Changelog: v1.5.6...v1.5.7

1.5.6

What's Changed

• 1.5.6 PR (fixes #144) by @BioWilko in #145

Full Changelog: v1.5.5...v1.5.6

1.5.5

What's Changed

• Switch out muscle for mafft by @BioWilko in #143

Full Changelog: v1.5.4...v1.5.5

1.5.4

Remove the platform tag from the docker image build to avoid nextflow image pull issues.

Full Changelog: v1.5.3...v1.5.4

1.5.3

Fix artic --version

Full Changelog: v1.5.2...v1.5.3

1.5.2

Small changes to fix setup.cfg and shrink dockerfiles

Full Changelog: v1.5.1...v1.5.2