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ARTICnetwork

This is the ARTICnetwork project, a Wellcome Trust funded project to provide a system for real-time genomic epidemiology of virus outbreaks.

Popular repositories Loading

  1. artic-ncov2019 artic-ncov2019 Public

    ARTIC nanopore protocol for nCoV2019 novel coronavirus

    Python 170 164

  2. fieldbioinformatics fieldbioinformatics Public

    Forked from zibraproject/zika-pipeline

    The ARTIC fieldbioinformatics pipeline

    Python 126 70

  3. rampart rampart Public

    Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

    JavaScript 82 34

  4. civet civet Public

    Cluster Investigation & Virus Epidemiology Tool

    Python 50 14

  5. primer-schemes primer-schemes Public

    Primer schemes for real-time genome epidemiology

    Python 30 42

  6. primalscheme3 primalscheme3 Public

    Primalscheme3. Generation of highly multiplex primerschemes

    HTML 18 7

Repositories

Showing 10 of 45 repositories
  • sealion Public

    Sequenece alignment viewer

    artic-network/sealion’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 18, 2025
  • aiv_hosts Public

    A mapping of avian influenza host designation to species names

    artic-network/aiv_hosts’s past year of commit activity
    0 CC0-1.0 0 0 0 Updated Nov 12, 2025
  • amplicon-nf Public

    Amplicon genome assembly for ARTIC style primer schemes using Nextflow.

    artic-network/amplicon-nf’s past year of commit activity
    Nextflow 5 MIT 2 4 0 Updated Nov 11, 2025
  • primal-page Public
    artic-network/primal-page’s past year of commit activity
    HTML 4 1 0 0 Updated Nov 6, 2025
  • artic-doc Public
    artic-network/artic-doc’s past year of commit activity
    HTML 0 3 3 0 Updated Nov 4, 2025
  • table-top Public

    System for delivering documents and data in an interactive training exercise

    artic-network/table-top’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Oct 27, 2025
  • fieldbioinformatics Public Forked from zibraproject/zika-pipeline

    The ARTIC fieldbioinformatics pipeline

    artic-network/fieldbioinformatics’s past year of commit activity
    Python 126 MIT 90 6 0 Updated Oct 17, 2025
  • ebolavirus Public

    A repository of information and resources about viruses in the genus Ebolavirus

    artic-network/ebolavirus’s past year of commit activity
    1 1 1 1 Updated Oct 16, 2025
  • align_trim Public

    Standalone version of fieldbioinformatics aligntrim. Soft clips amplicon scheme primer sites in BAM/SAM files.

    artic-network/align_trim’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Oct 16, 2025
  • scylla Public

    single sample processing

    artic-network/scylla’s past year of commit activity
    Python 9 GPL-3.0 6 6 4 Updated Oct 15, 2025
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