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Original file line number Diff line number Diff line change
Expand Up @@ -129,6 +129,7 @@ import org.apache.texera.amber.operator.visualization.sankeyDiagram.SankeyDiagra
import org.apache.texera.amber.operator.visualization.scatter3DChart.Scatter3dChartOpDesc
import org.apache.texera.amber.operator.visualization.scatterplot.ScatterplotOpDesc
import org.apache.texera.amber.operator.visualization.tablesChart.TablesPlotOpDesc
import org.apache.texera.amber.operator.visualization.ternaryContour.TernaryContourOpDesc
import org.apache.texera.amber.operator.visualization.ternaryPlot.TernaryPlotOpDesc
import org.apache.texera.amber.operator.visualization.timeSeriesplot.TimeSeriesOpDesc
import org.apache.texera.amber.operator.visualization.treeplot.TreePlotOpDesc
Expand Down Expand Up @@ -242,6 +243,7 @@ trait StateTransferFunc
new Type(value = classOf[TablesPlotOpDesc], name = "TablesPlot"),
new Type(value = classOf[ContinuousErrorBandsOpDesc], name = "ContinuousErrorBands"),
new Type(value = classOf[FigureFactoryTableOpDesc], name = "FigureFactoryTable"),
new Type(value = classOf[TernaryContourOpDesc], name = "TernaryContour"),
new Type(value = classOf[TernaryPlotOpDesc], name = "TernaryPlot"),
new Type(value = classOf[DendrogramOpDesc], name = "Dendrogram"),
new Type(value = classOf[NestedTableOpDesc], name = "NestedTable"),
Expand Down
Original file line number Diff line number Diff line change
@@ -0,0 +1,153 @@
/*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*/

package org.apache.texera.amber.operator.visualization.ternaryContour

import com.fasterxml.jackson.annotation.{JsonProperty, JsonPropertyDescription}
import com.kjetland.jackson.jsonSchema.annotations.JsonSchemaTitle
import org.apache.texera.amber.core.tuple.{AttributeType, Schema}
import org.apache.texera.amber.core.workflow.OutputPort.OutputMode
import org.apache.texera.amber.pybuilder.PythonTemplateBuilder.PythonTemplateBuilderStringContext
import org.apache.texera.amber.pybuilder.PyStringTypes.EncodableString
import org.apache.texera.amber.core.workflow.{InputPort, OutputPort, PortIdentity}
import org.apache.texera.amber.operator.PythonOperatorDescriptor
import org.apache.texera.amber.operator.metadata.annotations.AutofillAttributeName
import org.apache.texera.amber.operator.metadata.{OperatorGroupConstants, OperatorInfo}
import org.apache.texera.amber.pybuilder.PythonTemplateBuilder

/**
* Visualization Operator for Ternary Plots.
*
* This operator uses three data fields to construct a ternary plot.
* The points can optionally be color coded using a data field.
*/

class TernaryContourOpDesc extends PythonOperatorDescriptor {

// Add annotations for the first variable
@JsonProperty(value = "firstVariable", required = true)
@JsonSchemaTitle("Variable 1")
@JsonPropertyDescription("First variable data field")
@AutofillAttributeName var firstVariable: EncodableString = ""

// Add annotations for the second variable
@JsonProperty(value = "secondVariable", required = true)
@JsonSchemaTitle("Variable 2")
@JsonPropertyDescription("Second variable data field")
@AutofillAttributeName var secondVariable: EncodableString = ""

// Add annotations for the third variable
@JsonProperty(value = "thirdVariable", required = true)
@JsonSchemaTitle("Variable 3")
@JsonPropertyDescription("Third variable data field")
@AutofillAttributeName var thirdVariable: EncodableString = ""

// Add annotations for the fourth variable
@JsonProperty(value = "fourthVariable", required = true)
@JsonSchemaTitle("Measured Value")
@JsonPropertyDescription("Measured value data field")
@AutofillAttributeName var fourthVariable: EncodableString = ""

// OperatorInfo instance describing ternary plot
override def operatorInfo: OperatorInfo =
OperatorInfo(
userFriendlyName = "Ternary Contour",
operatorDescription =
"A ternary contour plot shows how a measured value changes across all mixtures of three components that always sum to a constant (usually 100%).",
operatorGroupName = OperatorGroupConstants.VISUALIZATION_SCIENTIFIC_GROUP,
inputPorts = List(InputPort()),
outputPorts = List(OutputPort(mode = OutputMode.SINGLE_SNAPSHOT))
)

override def getOutputSchemas(
inputSchemas: Map[PortIdentity, Schema]
): Map[PortIdentity, Schema] = {
val outputSchema = Schema()
.add("html-content", AttributeType.STRING)
Map(operatorInfo.outputPorts.head.id -> outputSchema)
Map(operatorInfo.outputPorts.head.id -> outputSchema)
}

/** Returns a Python string that drops any tuples with missing values */
def manipulateTable(): PythonTemplateBuilder = {
// Check for any empty data field names
assert(
firstVariable.nonEmpty && secondVariable.nonEmpty && thirdVariable.nonEmpty && fourthVariable.nonEmpty
)
pyb"""
| # Remove any tuples that contain missing values
| table.dropna(subset=[$firstVariable, $secondVariable, $thirdVariable, $fourthVariable], inplace = True)
|
| #Remove rows where any of the first three variables are negative
| table = table[(table[[$firstVariable, $secondVariable, $thirdVariable]] >= 0).all(axis=1)]
|
| #Remove zero-sum rows
| s = table[$firstVariable] + table[$secondVariable] + table[$thirdVariable]
| table = table[s > 0]
|"""
}

/** Returns a Python string that creates the ternary contour plot figure */
def createPlotlyFigure(): PythonTemplateBuilder = {
pyb"""
| A = table[$firstVariable].to_numpy()
| B = table[$secondVariable].to_numpy()
| C = table[$thirdVariable].to_numpy()
| Z = table[$fourthVariable].to_numpy()
| fig = ff.create_ternary_contour(np.array([A,B,C]), Z, pole_labels=[$firstVariable, $secondVariable, $thirdVariable], interp_mode='cartesian')
|"""
}

/** Returns a Python string that yields the html content of the ternary contour plot */
override def generatePythonCode(): String = {
val finalCode =
pyb"""
|from pytexera import *
|
|import plotly.express as px
|import plotly.io
|import plotly.figure_factory as ff
|import numpy as np
|
|class ProcessTableOperator(UDFTableOperator):
|
| # Generate custom error message as html string
| def render_error(self, error_msg):
| return '''<h1>TernaryContour is not available.</h1>
| <p>Reasons are: {} </p>
| '''.format(error_msg)
|
| @overrides
| def process_table(self, table: Table, port: int) -> Iterator[Optional[TableLike]]:
| if table.empty:
| yield {'html-content': self.render_error("Input table is empty.")}
| return
| ${manipulateTable()}
| if table.empty:
| yield {'html-content': self.render_error("No valid rows left (every row has at least 1 missing value).")}
| return
| ${createPlotlyFigure()}
| # Convert fig to html content
| html = plotly.io.to_html(fig, include_plotlyjs = 'cdn', auto_play = False)
| yield {'html-content':html}
|"""
finalCode.encode
}

}
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