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Graph plots #197

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622d7b8
Fix param name typo in function docstring
kamurani Jul 2, 2022
8a3f3a4
add scaling node size by "rsa" feature as well as degree
kamurani Jul 2, 2022
9c9520b
add option for scaling node size by meiler embedding dimensions. Tak…
kamurani Jul 2, 2022
44a0bf8
remove walrus operator := for compatability
kamurani Jul 6, 2022
920e14e
Merge pull request #1 from a-r-j/master
kamurani Jul 7, 2022
efc69bb
Merge pull request #2 from a-r-j/master
kamurani Jul 8, 2022
a2806b6
Add type hints
a-r-j Jul 8, 2022
024e7a0
Update changelog
a-r-j Jul 8, 2022
7569751
add support for sizing nodes by RSA and colouring by hydrophobicity i…
kamurani Jul 22, 2022
66baf18
Merge remote-tracking branch 'origin/master' into graph_plots
kamurani Jul 22, 2022
3513e0c
Merge branch 'master' into graph_plots
a-r-j Jul 22, 2022
21d496a
add amino acid 3-letter code mapping to hydrophobicity scales from th…
kamurani Jul 29, 2022
2f4f0ee
add amino acid 3-letter code mapping to hydrophobicity scales from th…
kamurani Jul 29, 2022
fbac7ea
colour by hydrophobicity implemented for different scales
kamurani Jul 29, 2022
5878e4f
refactor `_node_feature` function; colour_by and size_by msupported w…
kamurani Jul 29, 2022
8948b1f
fix import statement to use graphein actual
kamurani Jul 29, 2022
1212d5e
add `hydrophobicity()`. not sure if should be passed a parameter dec…
kamurani Jul 29, 2022
6b29498
"Add a utility for getting the names of node, edge and graph attribut…
a-r-j Aug 1, 2022
00f99a5
fix edge attribute selection in util
a-r-j Aug 1, 2022
28b0ee1
add test for attribute name selection util
a-r-j Aug 1, 2022
8f22fed
use typing_extensions Literal for 3.7 support and update changelog
a-r-j Aug 2, 2022
2b69d6e
docstring, black
a-r-j Oct 23, 2022
9743332
black
a-r-j Oct 23, 2022
43bc240
fix type import; black
a-r-j Oct 23, 2022
c5e6d83
Merge branch 'master' into graph_plots
a-r-j Oct 31, 2022
f43f5e7
Merge branch 'master' into graph_plots
a-r-j Feb 16, 2023
fd1f996
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Feb 16, 2023
37aaee8
Merge branch 'master' into graph_plots
a-r-j Mar 25, 2024
34c816b
Merge branch 'master' into graph_plots
a-r-j Oct 20, 2024
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Update changelog
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@a-r-j
a-r-j authored Jul 8, 2022

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commit 024e7a068cca84c11c15ab4b0a9a4eb751a206f0
3 changes: 2 additions & 1 deletion CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -2,7 +2,8 @@

#### Changes

* #187 updates sequence retrieval due to UniProt API changes.
* [Feature] - [#186](https://github.com/a-r-j/graphein/pull/186) adds support for scaling node sizes in plots by a computed feature. Contribution by @cimranm
* [Patch] - [#187](https://github.com/a-r-j/graphein/pull/187) updates sequence retrieval due to UniProt API changes.

### 1.5.0