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Graph plots#197

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kamurani wants to merge 29 commits intoa-r-j:mastera-r-j/graphein:masterfrom kamurani:graph_plotskamurani/graphein:graph_plotsCopy head branch name to clipboard

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Commits on Jul 2, 2022

• Fix param name typo in function docstring

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• add scaling node size by "rsa" feature as well as degree

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• add option for scaling node size by meiler embedding dimensions. Takes negative values to be zero.

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Commits on Jul 6, 2022

• remove walrus operator := for compatability

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Commits on Jul 7, 2022

• Merge pull request #1 from a-r-j/master

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Commits on Jul 8, 2022

• Merge pull request #2 from a-r-j/master

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• Add type hints

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• Update changelog

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Commits on Jul 22, 2022

• add support for sizing nodes by RSA and colouring by hydrophobicity in asteroid_plot

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• Merge remote-tracking branch 'origin/master' into graph_plots

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• Merge branch 'master' into graph_plots

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Commits on Jul 29, 2022

• add amino acid 3-letter code mapping to hydrophobicity scales from the literature.

  kamurani

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• add amino acid 3-letter code mapping to hydrophobicity scales from the literature.

  kamurani

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• colour by hydrophobicity implemented for different scales

  kamurani

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• refactor _node_feature function; colour_by and size_by msupported with more features

  kamurani

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• fix import statement to use graphein actual

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• add hydrophobicity(). not sure if should be passed a parameter deciding which scale to use; or just return vector of values for all 5 scales.

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Commits on Aug 1, 2022

• "Add a utility for getting the names of node, edge and graph attributes present"

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• fix edge attribute selection in util

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• add test for attribute name selection util

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Commits on Aug 2, 2022

• use typing_extensions Literal for 3.7 support and update changelog

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Commits on Oct 23, 2022

• docstring, black

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• black

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• fix type import; black

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Commits on Oct 31, 2022

• Merge branch 'master' into graph_plots

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Commits on Feb 16, 2023

• Merge branch 'master' into graph_plots

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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Commits on Mar 25, 2024

• Merge branch 'master' into graph_plots

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Commits on Oct 20, 2024

• Merge branch 'master' into graph_plots

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