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Multiomics-Analytics-Group · Sep 6, 2024 · c38a6c1 · c38a6c1
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diff --git a/README.rst b/README.rst
@@ -51,8 +51,8 @@ A Python package with statistical functions to analyse multimodal molecular data
 * Documentation: https://analytics-core.readthedocs.io.
 
 
-Installation
-============
+PyPI Installation
+=================
 
 ::
 

diff --git a/docs/index.rst b/docs/index.rst
@@ -1,33 +1,43 @@
-Welcome to acore's documentation!
-======================================
 
 .. include:: ../README.rst 
+   :start-line: 0
+   :end-line: 66
 
 .. toctree::
-   :maxdepth: 2
-   :caption: Contents:
+   :maxdepth: 1
+   :hidden:
 
    installation
-   usage
-   contributing
-   authors
-   history
-   README.md
 
 .. toctree::
    :maxdepth: 1
-   :caption: API examples
+   :caption: API usage examples
+   :hidden:
 
    api_examples/exploratory_analysis
 
 .. toctree::
    :maxdepth: 2
    :caption: Modules
+   :hidden:
 
    reference/acore
 
 Indices and tables
-==================
+------------------
 * :ref:`genindex`
 * :ref:`modindex`
 * :ref:`search`
+
+
+.. toctree::
+   :maxdepth: 1
+   :caption: MISC:
+   :hidden:
+
+   contributing
+   authors
+   history
+   README.md
+
+
diff --git a/docs/installation.rst b/docs/installation.rst
@@ -1,8 +1,8 @@
 .. highlight:: shell
 
-============
-Installation
-============
+====================
+Installation options
+====================
 
 
 Stable release

diff --git a/docs/usage.rst b/docs/usage.rst