🎨 sections and views improved

docs/api_examples/ANCOVA_analysis.ipynb

@@ -118,7 +118,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "### Filtering data"
+    "## Filtering data"
    ]
   },
   {
@@ -128,14 +128,6 @@
     "If data is already filtered and/or imputed, skip this step."
    ]
   },
-  {
-   "cell_type": "markdown",
-   "id": "406f9363",
-   "metadata": {},
-   "source": [
-    "## Filtering features"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -485,7 +477,56 @@
    },
    "outputs": [],
    "source": [
-    "anova.iloc[:, 2:7]"
+    "view = anova.iloc[:, 2:7]\n",
+    "viewed_cols = view.columns.to_list()\n",
+    "view"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3d362360",
+   "metadata": {},
+   "source": [
+    "Test results"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2e2cf127",
+   "metadata": {
+    "tags": [
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "regex_filter = \"pval|padj|reject|stat|FC\"\n",
+    "view = anova.filter(regex=regex_filter)\n",
+    "viewed_cols.extend(view.columns)\n",
+    "view"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "d02676e9",
+   "metadata": {},
+   "source": [
+    "Other information"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4c8f516b",
+   "metadata": {
+    "tags": [
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "anova.drop(columns=viewed_cols)"
    ]
   },
   {

docs/api_examples/ANCOVA_analysis.py

@@ -61,14 +61,11 @@
 omics
 
 # %% [markdown]
-# ### Filtering data
+# ## Filtering data
 
 # %% [markdown]
 # If data is already filtered and/or imputed, skip this step.
 
-# %% [markdown]
-# ## Filtering features
-
 # %% tags=["hide-input"]
 M_before = omics.shape[1]
 omics = omics.dropna(thresh=int(len(omics) * freq_cutoff), axis=1)
@@ -224,7 +221,24 @@
 # view averages per protein group
 
 # %% tags=["hide-input"]
-anova.iloc[:, 2:7]
+view = anova.iloc[:, 2:7]
+viewed_cols = view.columns.to_list()
+view
+
+# %% [markdown]
+# Test results
+
+# %% tags=["hide-input"]
+regex_filter = "pval|padj|reject|stat|FC"
+view = anova.filter(regex=regex_filter)
+viewed_cols.extend(view.columns)
+view
+
+# %% [markdown]
+# Other information
+
+# %% tags=["hide-input"]
+anova.drop(columns=viewed_cols)
 
 # %% [markdown]
 # ## Comparing ANOVA and ANCOVA results