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@FredHutch

Fred Hutch Cancer Center

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  1. Oncoscape Oncoscape Public

    a web application to apply/develop analysis tools for Molecular and Clinical data

    JavaScript 179 45

  2. SEACR SEACR Public

    SEACR: Sparse Enrichment Analysis for CUT&RUN

    Shell 107 45

  3. motuz motuz Public

    Motuz - A web based infrastructure for large scale data movements between on-premise and cloud

    JavaScript 105 12

  4. proxmox-tools proxmox-tools Public

    prox command line interface for proxmox and other tools and customizations

    Python 40 6

  5. slurm-examples slurm-examples Public

    examples of using slurm in life sciences workflows using posix file systems and object storage

    Shell 39 14

  6. wiki wiki Public

    SciWiki: Collective KnowledgeBase for Scientific Data and Use

    HTML 38 46

Repositories

Showing 10 of 601 repositories
  • wdl-unit-tests Public

    Collection of simple WDL's for use in unit testing of WDL-centric software such as PROOF

    FredHutch/wdl-unit-tests’s past year of commit activity
    Python 0 MIT 0 28 11 Updated Feb 11, 2025
  • quality Public

    The program QUALITY is a variant of the Minimum χ2 (MC) method for limiting dilution assays. It modifies the MC method to allow the user to specify the probabilities of the false negative and false positive PCR.

    FredHutch/quality’s past year of commit activity
    C++ 0 0 0 0 Updated Feb 11, 2025
  • gig-map Public

    Build a map of genes present across a set of microbial genomes

    FredHutch/gig-map’s past year of commit activity
    Python 13 4 0 0 Updated Feb 11, 2025
  • trm-calculator Public

    TRM R Shiny app repo

    FredHutch/trm-calculator’s past year of commit activity
    R 1 MIT 0 6 5 Updated Feb 10, 2025
  • gimap Public

    Genetic Interaction MAPping for dual target CRISPR screens

    FredHutch/gimap’s past year of commit activity
    HTML 0 CC0-1.0 0 5 1 Updated Feb 10, 2025
  • marimo-viewer-cirro Public template Forked from FredHutch/cut-and-run-viewer

    Marimo-based visualization of data stored in Cirro

    FredHutch/marimo-viewer-cirro’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Feb 10, 2025
  • cut-and-run-viewer Public Forked from FredHutch/differential-expression-viewer

    Visualization of CUT&RUN results

    FredHutch/cut-and-run-viewer’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Feb 10, 2025
  • differential-expression-viewer Public

    Visualization of differential expression results

    FredHutch/differential-expression-viewer’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Feb 10, 2025
  • itn-dashboard Public

    ITN Dashboard for data generated from metricminer

    FredHutch/itn-dashboard’s past year of commit activity
    R 0 0 5 0 Updated Feb 9, 2025
  • workflows-cirro Public

    Collection of workflow configurations for execution via Cirro

    FredHutch/workflows-cirro’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 7, 2025
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