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    613 repositories

    • VISCtemplates

      Public
      Tools for writing reproducible reports at VISC
      visc
      R
      •
      Other
      •2•6•32•7•Updated Mar 26, 2025Mar 26, 2025

    • easybuild-life-sciences

      Public
      Howto and implementation documentation
      easybuildlifesciencescientific-softwareeasyconfig
      C++
      •6•22•6•0•Updated Mar 26, 2025Mar 26, 2025

    • viroblast

      Public
      ViroBLAST is the web tool to provide sequence comparison and contamination checking on viral research.
      Perl
      •0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • rnaseq-de-viewer-marimo

      Public
      View for RNAseq-based Differential Expression Analysis Results using Marimo
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • marimo-viewer-cirro

      Public template
      Marimo-based visualization of data stored in Cirro
      Python
      •
      MIT License
      •2•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • differential-expression-viewer

      Public
      Visualization of differential expression results
      Python
      •
      MIT License
      •2•2•0•0•Updated Mar 25, 2025Mar 25, 2025

    • gig-map-viewer

      Public
      Interactive viewer of pangenome results generated by gig-map
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • wiki

      Public
      SciWiki: Collective KnowledgeBase for Scientific Data and Use
      data-sciencebioinformaticswikicomputingsciwikifhdaslcommunitydocumentationopen-science
      Python
      •
      Other
      •45•38•61•2•Updated Mar 25, 2025Mar 25, 2025

    • gimap

      Public
      Genetic Interaction MAPping for dual target CRISPR screens
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•6•2•Updated Mar 24, 2025Mar 24, 2025

    • itn-dashboard

      Public
      ITN Dashboard for data generated from metricminer
      dasl
      R
      •0•0•6•0•Updated Mar 23, 2025Mar 23, 2025

    • wdl-unit-tests

      Public
      Collection of simple WDL's for use in unit testing of WDL-centric software such as PROOF
      Python
      •
      MIT License
      •0•0•27•7•Updated Mar 21, 2025Mar 21, 2025

    • ocdo

      Public
      Home of the OCDO public website
      SCSS
      •1•0•1•0•Updated Mar 20, 2025Mar 20, 2025

    • pgmap

      Public
      Python
      •1•0•5•4•Updated Mar 19, 2025Mar 19, 2025

    • target-data-viz

      Public
      Shiny app for visualizing TARGET pediatric AML data
      HTML
      •2•3•8•0•Updated Mar 19, 2025Mar 19, 2025

    • ichorCurate

      Public
      Python
      •
      Other
      •2•0•0•0•Updated Mar 19, 2025Mar 19, 2025

    • Fatherree-Hippe-MacPherson-SCLC-2025

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 19, 2025Mar 19, 2025

    • gig-map

      Public
      Build a map of genes present across a set of microbial genomes
      Python
      •4•14•0•0•Updated Mar 16, 2025Mar 16, 2025

    • cohn-treemaker

      Public
      WebApp to create Phylogenetic Trees with stacked clones from newick files containing sequencing data
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • divein

      Public
      DIVEIN is a web service that performs automated maximum likelihood phylogenetic analyses of nucleotide and amino acid sequences.
      Perl
      •0•0•0•0•Updated Mar 12, 2025Mar 12, 2025

    • nf-midas

      Public
      Nextflow workflow running MIDAS for metagenomic analysis
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Mar 11, 2025Mar 11, 2025

    • GBSR_heatmap

      Public
      Custom heatmap functionality with gene lists
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • cut-and-run-viewer

      Public
      Visualization of CUT&RUN results
      Python
      •
      MIT License
      •2•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • docker-midas

      Public
      Docker image running MIDAS
      Dockerfile
      •2•1•1•1•Updated Mar 10, 2025Mar 10, 2025

    • HHV8_Inf_Cell_Model

      Public
      Mathematical model for HHV8 viral spread
      C++
      •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • nf-kneaddata

      Public
      Nextflow workflow used to run kneaddata
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • trm-calculator

      Public
      TRM R Shiny app repo
      R
      •
      MIT License
      •0•1•0•0•Updated Mar 4, 2025Mar 4, 2025

    • GDSCNsoilsites

      Public
      Homepage for BioDIGS Project. Learn about the project and download data.
      datametagenomicsstudent-researchbiodigs
      R
      •
      MIT License
      •0•1•11•0•Updated Mar 4, 2025Mar 4, 2025

    • shiny-and-leaflet

      Public
      R
      •0•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • tfcb_2025

      Public
      Course website for MCB 536 Tools for Computational Biology Fall 2025
      Jupyter Notebook
      •0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

    • workflows-cirro

      Public
      Collection of workflow configurations for execution via Cirro
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025