Container setup for TEM workflow + tomography/SPA bugfixes#503

Merged

tieneupin merged 18 commits intomainfrom

add-tem-instrument-server

Mar 11, 2025

Commits on Mar 5, 2025

Commits on Mar 6, 2025

Added 'rsync_url' as an attribute to 'MurfeyInstanceEnvironment' class
tieneupin
committed
Get instrument name from database lookup instead of using the 'get_microscope()' function
tieneupin
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Commits on Mar 7, 2025

Merged recent changes from 'main' branch
tieneupin
committed
Use MachineConfig 'gain_directory_name' key to set the save path for the EER fractionation file
tieneupin
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Replaced hard-coded 'processing' with 'gain_directory_name' value from MachineConfig in the demo API
tieneupin
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Stored 'gain_directory_name' as a variable to shorten file line count
tieneupin
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Added logs to report when the 'prepare_(eer_)_gain' functions fail
tieneupin
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Added logic to use .mdoc files to work out the file extension to use with the Analyser; added debug logs to track progress of Analyser
tieneupin
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Added logs to track the gradual population of tilt series in the tomogrpahy workflow
tieneupin
committed

Commits on Mar 11, 2025