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A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

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DataBiosphere/toil

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ATTENTION: Toil will be dropping python 2.7 support on January 1, 2020 when python 2.7 itself is scheduled to die. This is when the last release of python 2.7 compatible toil will be.

Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system, written entirely in Python, and designed around the principles of functional programming.

  • Check the website for a description of Toil and its features.
  • Full documentation for the latest stable release can be found at Read the Docs.
  • See our occasional blog for tutorials.
  • Google Groups discussion forum and videochat invite list.
Join the chat at https://gitter.im/bd2k-genomics-toil/Lobby

Note: Toil moved from https://github.com/BD2KGenomics/toil to https://github.com/DataBiosphere/toil on July 5th, 2018.