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Promotion 2025-01-28 prod (#6858)#6865

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dsotirho-ucsc merged 111 commits intoprodDataBiosphere/azul:prodfrom promotions/2025-01-28-prodDataBiosphere/azul:promotions/2025-01-28-prodCopy head branch name to clipboardFeb 1, 2025

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Commits on Nov 8, 2024

• [r R] Promotion 2024-11-05 anvilprod (#6683, PR #6687)

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Commits on Nov 16, 2024

• [r] Promotion 2024-11-12 anvilprod (#6699, PR #6710)

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Commits on Nov 23, 2024

• [r R] Promotion 2024-11-19 anvilprod (#6716, PR #6721)

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Commits on Dec 10, 2024

• [R a] Promotion 2024-12-03 anvilprod (#6737, PR #6745)

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Commits on Dec 12, 2024

• Promotion 2024-12-10 anvilprod (#6752, PR #6757)

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Commits on Dec 19, 2024

• [u R] Promotion 2024-12-17 anvilprod (#6768, PR #6772)

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Commits on Dec 30, 2024

• [r R] Promotion 2024-12-29 anvilprod (#6789, PR #6797)

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Commits on Jan 17, 2025

• Rename template variable

  

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• Remove top bar from Swagger UI

  

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• Reorder spec properties

  

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• [A] Serve root OpenAPI document from /openapi.json (#2241)

  

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• Grammar

  

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• [A] Serve Swagger from /swagger, not /static

  

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• Reorder methods

  

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• Cosmetics

  

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• Remove redundant overrides

  

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• No need to export download rate limit variable

  

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• Fix inconsistent variable name

  

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• Fix formatting

  

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• [a] Add robots.txt (#6809)

  

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• [p] Conditionally enable bot control in WAF (#6809)

  

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• [p] Enable WAF Bot Control in dev and anvildev (#6809)

  

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Commits on Jan 18, 2025

• [r R a A] Promotion 2025-01-14 anvilprod (#6824, PR #6829)

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• [a A] Fix: Facebook crawler excessively hits download endpoint (#6809, PR #6819)

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Commits on Jan 20, 2025

• [R p] Cover azul.types with mypy (#6821)

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• Add one use of Self

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• [p] Cover azul.collection with mypy (#6821)

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• [p] Cover azul.args and azul.attrs with mypy (#6821)

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• [p] Cover azul.auth with mypy (#6821)

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• [p] Cover azul.azulclient with mypy (#6821)

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• [p] Cover azul.openapi with mypy (#6821)

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• Rename schema.TYPE to schema.Form

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• Rename schema.make_type to schema.make and schema.schema

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• Rename schema.in_range to schema.range

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• Rename schema.with_default to schema.default

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• Inline schema.properties()

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• Unify schema.object and schema.object_type

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• Replace Union and Optional

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• Make some assertions requirements

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• Add overloads for azul.open_resource

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• Fix bug in MutableCompositeJSON

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• Rearrange JSON types; extract type alias for JSON arrays

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• Cosmetics

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• Rename method_spec to spec

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• Reorder method args

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• [R] Fix: AttributeError for Chalice.lambda_context and .current_request (#4558)

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• Simplify indexer action enum

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• [R p] Cover azul.chalice with mypy (#6821)

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• [R] Adopt mypy (#6821, #4558, PR #6822)

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Commits on Jan 21, 2025

• Fix: Unbound decorator assertion fires in main deployment

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• [r H] Hotfix anvilprod: Indexing snapshot ANVIL_CMG_Yale_GRU in anvilprod fails due to a RequirementError (#6837)

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• Add DUOS bundle to response test

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• [r] Support for AnVIL duos_id (#6620)

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Commits on Jan 22, 2025

• [r] Support for AnVIL duos_id (#6620, PR #6668)

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• [r H] Hotfix anvilprod: Indexing snapshot ANVIL_CMG_Yale_GRU fails due to joiner (#6837, PR #6838)

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• [1/5] Add contact information to Swagger UI (#6205)

  

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• [2/5] Add contact information to Swagger UI (#6205)

  

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• [3/5] Add contact information to Swagger UI (#6205)

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• [4/5] Add contact information to Swagger UI (#6205)

  

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• [5/5] Add contact information to Swagger UI (#6205)

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• Merge branch 'develop' into backports/e3586cc

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• Add contact information to Swagger UI (#6205, PR #6720)

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• [r H] Backport: e3586cc (#6837, PR #6838, PR #6840)

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• Ran make docker_images.json

  

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• [R] Update direct Python dependencies (#6805)

  

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• [R] Ran make requirements_update

  

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• Update Terraform to 1.10.4 (#6430)

  

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• Update PyCharm to 2024.3.1.1-42 (#6805)

  

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• Update Elasticsearch to 7.17.27-35 (#6805)

  

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• Update Bigquery Emulator to 0.4.4-21 (#6805)

  

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• Update Docker to 27.5.0 (#6805)

  

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• Update GitLab to 17.7.2-ce.0 and runner to ubuntu-v17.7.0 (#6805)

  

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• Update ClamAV to 1.4.1-21 (#6805)

  

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• Update GitLab AMI to v12 (#6805)

  

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Commits on Jan 23, 2025

• [R] Ran make requirements_update again

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• [R] Upgrade dependencies 2025-01-06 (#6805, PR #6814)

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• Fix typo in prod/environment.py

  

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• [u] Fix: Managed access flag is missing from AnVIL deployments (#6754)

  

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• [u] Fix: Managed access flag is missing from AnVIL deployments (#6754, PR #6827)

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• Fix: Critical SecurityHub finding Config.1 (#6766)

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Commits on Jan 24, 2025

• Fix: Critical SecurityHub finding Config.1 (#6766, PR #6836)

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• Revert "Fix: Critical SecurityHub finding Config.1 (#6766, PR #6836)"

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Commits on Jan 27, 2025

• Revert "Fix: Alarm api_unauthorized for HeadBucket from AWS Config (#6134)"

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• Fix: Alarm api_unauthorized for HeadBucket from AWS Config (#6134, PR #6842)

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• [p] Cover azul.bigquery with mypy (#6821)

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• Replace Union and Optional

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• [p] Cover azul.bigquery_reservation with mypy (#6821, #6834)

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• [a] Remove change log

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• [p] Cover azul.csp with mypy (#6821)

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• Replace Optional

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• [R] Add remaining boto3 stub extras

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• [R] Switch to "lite" version of boto3 stubs

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• [p] Cover azul.deployment with mypy (#6821)

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• Replace Optional

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• [p] Cover azul.strings with mypy (#6821)

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• [p] Cover azul.logging with mypy (#6821)

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Commits on Jan 28, 2025

• Deprecate require()/reject() in favor of assert

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• [p] Cover azul with mypy (#6821)

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• [p] Cover azul.docker (#6821)

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• Fix GH code scanning alerts: Unreachable code, Unused local variable

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• Fix GH code scanning alert: Imprecise assertion

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• Fix GH code scanning alert: Module is imported with 'import' and 'import from'

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• Fix GH code scanning alert: Incomplete ordering

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• Replace require()/reject() with assert in one module

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• Fix GH code scanning alert: Explicit returns mixed with implicit (fall through) returns

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• Upgrade GH code scanning actions from v2 to v3

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• Replace now unused CodeQL action config property

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• [R] Ran make requirements_update

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• [p] Adopt mypy (#6821, PR #6854)

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Commits on Jan 29, 2025

• [p] Fix: Redundant manifest generations due to race condition (#6850)

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• [p] Fix: Redundant manifest generations due to race condition (#6850, PR #6855)

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