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CogSciUOS · Apr 28, 2020 · ba951d7 · ba951d7
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diff --git a/README.md b/README.md
@@ -2,7 +2,6 @@
 
 We are a study project of Osnabrueck University that is interested in Computer Vision. With this project we want to improve the performance of an asparagus sorting machine. The repository shows how we classify images of asparagus with Machine Learning methods.
 
-
 You can find in this repository: 
 
 -   Documentation
@@ -15,15 +14,13 @@ You can find in this repository:
     -   Labeling Application
     -   Kappa Agreement
     -   Annotations 
-    -   Data Sets 
+    -   Data Sets
 -   Classification
-    -   Pipeline
     -   Unsupervised Learning
     -   Semi-Supervised Learning
     -   Supervised Learning
 -   Evaluation
 -   Images
 -   Service
 
-
 Have a look at our [documentation](https://asparagus.readthedocs.io/en/latest/)!
diff --git a/classification/app_from_img_to_categories.py → app_from_img_to_categories.py b/classification/app_from_img_to_categories.py → app_from_img_to_categories.py
diff --git a/..._supervised_learning_big_bottleneck.ipynb → ..._supervised_learning_big_bottleneck.ipynb b/..._supervised_learning_big_bottleneck.ipynb → ..._supervised_learning_big_bottleneck.ipynb
diff --git a/...pervised_learning_convolutional_vae.ipynb → ...pervised_learning_convolutional_vae.ipynb b/...pervised_learning_convolutional_vae.ipynb → ...pervised_learning_convolutional_vae.ipynb
diff --git a/...ion/variational_auto_encoder/asparagus.py → ...sed/variational_auto_encoder/asparagus.py b/...ion/variational_auto_encoder/asparagus.py → ...sed/variational_auto_encoder/asparagus.py
diff --git a/...ion/variational_auto_encoder/combined.csv → ...sed/variational_auto_encoder/combined.csv b/...ion/variational_auto_encoder/combined.csv → ...sed/variational_auto_encoder/combined.csv
diff --git a/...fication/variational_auto_encoder/grid.py → ...pervised/variational_auto_encoder/grid.py b/...fication/variational_auto_encoder/grid.py → ...pervised/variational_auto_encoder/grid.py
diff --git a/...riational_auto_encoder/vae_mlp/vae_mlp.h5 → ...riational_auto_encoder/vae_mlp/vae_mlp.h5 b/...riational_auto_encoder/vae_mlp/vae_mlp.h5 → ...riational_auto_encoder/vae_mlp/vae_mlp.h5
diff --git a/...ncoder/vae_mlp/variational_autoencoder.py → ...ncoder/vae_mlp/variational_autoencoder.py b/...ncoder/vae_mlp/variational_autoencoder.py → ...ncoder/vae_mlp/variational_autoencoder.py
diff --git a/.../vae_mlp/variational_autoencoder_local.py → .../vae_mlp/variational_autoencoder_local.py b/.../vae_mlp/variational_autoencoder_local.py → .../vae_mlp/variational_autoencoder_local.py
diff --git a/...ated_head_network/training_on_heads.ipynb → ...ated_head_network/training_on_heads.ipynb b/...ated_head_network/training_on_heads.ipynb → ...ated_head_network/training_on_heads.ipynb
diff --git a/classification/labelCNN/__init__.py → ...ification/supervised/labelCNN/__init__.py b/classification/labelCNN/__init__.py → ...ification/supervised/labelCNN/__init__.py
diff --git a/classification/labelCNN/combine_labels.py → ...ion/supervised/labelCNN/combine_labels.py b/classification/labelCNN/combine_labels.py → ...ion/supervised/labelCNN/combine_labels.py
diff --git a/...ication/labelCNN/models/CNN_katha_grid.h5 → ...ervised/labelCNN/models/CNN_katha_grid.h5 b/...ication/labelCNN/models/CNN_katha_grid.h5 → ...ervised/labelCNN/models/CNN_katha_grid.h5
diff --git a/...on/labelCNN/models/model_5_epochs_grid.h5 → ...ed/labelCNN/models/model_5_epochs_grid.h5 b/...on/labelCNN/models/model_5_epochs_grid.h5 → ...ed/labelCNN/models/model_5_epochs_grid.h5
diff --git a/classification/labelCNN/multilabel_model.py → ...n/supervised/labelCNN/multilabel_model.py b/classification/labelCNN/multilabel_model.py → ...n/supervised/labelCNN/multilabel_model.py
diff --git a/classification/labelCNN/training.py → ...ification/supervised/labelCNN/training.py b/classification/labelCNN/training.py → ...ification/supervised/labelCNN/training.py
diff --git a/...ineering/bendedness_based_on_angles.ipynb → ...ineering/bendedness_based_on_angles.ipynb b/...ineering/bendedness_based_on_angles.ipynb → ...ineering/bendedness_based_on_angles.ipynb
diff --git a/...gineering/histograms_of_palette_all.ipynb → ...gineering/histograms_of_palette_all.ipynb b/...gineering/histograms_of_palette_all.ipynb → ...gineering/histograms_of_palette_all.ipynb
diff --git a/...tion/pca_code/get_images/combined_new.csv → ...ised/pca_code/get_images/combined_new.csv b/...tion/pca_code/get_images/combined_new.csv → ...ised/pca_code/get_images/combined_new.csv
diff --git a/...cation/pca_code/get_images/feature_ids.py → ...rvised/pca_code/get_images/feature_ids.py b/...cation/pca_code/get_images/feature_ids.py → ...rvised/pca_code/get_images/feature_ids.py
diff --git a/classification/pca_code/get_images/grid.py → .../unsupervised/pca_code/get_images/grid.py b/classification/pca_code/get_images/grid.py → .../unsupervised/pca_code/get_images/grid.py
diff --git a/...pca_code/get_images/submit_feature_ids.py → ...pca_code/get_images/submit_feature_ids.py b/...pca_code/get_images/submit_feature_ids.py → ...pca_code/get_images/submit_feature_ids.py
diff --git a/...fication/pca_code/pca_calculation/grid.py → ...pervised/pca_code/pca_calculation/grid.py b/...fication/pca_code/pca_calculation/grid.py → ...pervised/pca_code/pca_calculation/grid.py
diff --git a/...a_code/pca_calculation/pca_calculation.py → ...a_code/pca_calculation/pca_calculation.py b/...a_code/pca_calculation/pca_calculation.py → ...a_code/pca_calculation/pca_calculation.py
diff --git a/...pca_calculation/submit_pca_calculation.py → ...pca_calculation/submit_pca_calculation.py b/...pca_calculation/submit_pca_calculation.py → ...pca_calculation/submit_pca_calculation.py
diff --git a/...ication/pca_code/pca_classify/classify.py → ...ervised/pca_code/pca_classify/classify.py b/...ication/pca_code/pca_classify/classify.py → ...ervised/pca_code/pca_classify/classify.py
diff --git a/classification/pca_code/pca_classify/grid.py → ...nsupervised/pca_code/pca_classify/grid.py b/classification/pca_code/pca_classify/grid.py → ...nsupervised/pca_code/pca_classify/grid.py
diff --git a/.../pca_code/pca_classify/submit_classify.py → .../pca_code/pca_classify/submit_classify.py b/.../pca_code/pca_classify/submit_classify.py → .../pca_code/pca_classify/submit_classify.py
diff --git a/...ca_code/pca_first_approaches/pca_3_img.py → ...ca_code/pca_first_approaches/pca_3_img.py b/...ca_code/pca_first_approaches/pca_3_img.py → ...ca_code/pca_first_approaches/pca_3_img.py
diff --git a/...ode/pca_first_approaches/pca_colour_ac.py → ...ode/pca_first_approaches/pca_colour_ac.py b/...ode/pca_first_approaches/pca_colour_ac.py → ...ode/pca_first_approaches/pca_colour_ac.py
diff --git a/...ode/pca_first_approaches/pca_greyscale.py → ...ode/pca_first_approaches/pca_greyscale.py b/...ode/pca_first_approaches/pca_greyscale.py → ...ode/pca_first_approaches/pca_greyscale.py
diff --git a/.../pca_code/pca_first_approaches/pca_rgb.py → .../pca_code/pca_first_approaches/pca_rgb.py b/.../pca_code/pca_first_approaches/pca_rgb.py → .../pca_code/pca_first_approaches/pca_rgb.py
diff --git a/..._first_approaches/pca_rgb_eigenspargel.py → ..._first_approaches/pca_rgb_eigenspargel.py b/..._first_approaches/pca_rgb_eigenspargel.py → ..._first_approaches/pca_rgb_eigenspargel.py
diff --git a/...tation/docs/Asparagus RoadMap actual.xlsx → documentation/Asparagus RoadMap actual.xlsx b/...tation/docs/Asparagus RoadMap actual.xlsx → documentation/Asparagus RoadMap actual.xlsx
diff --git a/...ntation/docs/Classification Tree.001.jpeg → documentation/Classification Tree.001.jpeg b/...ntation/docs/Classification Tree.001.jpeg → documentation/Classification Tree.001.jpeg
diff --git a/documentation/docs/Makefile → documentation/Makefile b/documentation/docs/Makefile → documentation/Makefile
diff --git a/...ion/docs/WorkSchedule2020_update24.1.docx → ...entation/WorkSchedule2020_update24.1.docx b/...ion/docs/WorkSchedule2020_update24.1.docx → ...entation/WorkSchedule2020_update24.1.docx
diff --git a/documentation/docs/WorkSchedule_2019.html → documentation/WorkSchedule_2019.html b/documentation/docs/WorkSchedule_2019.html → documentation/WorkSchedule_2019.html
diff --git a/documentation/docs/WorkSchedule_2019.md → documentation/WorkSchedule_2019.md b/documentation/docs/WorkSchedule_2019.md → documentation/WorkSchedule_2019.md
diff --git a/...n/docs/api/app_from_img_to_categories.rst → ...tation/api/app_from_img_to_categories.rst b/...n/docs/api/app_from_img_to_categories.rst → ...tation/api/app_from_img_to_categories.rst
diff --git a/documentation/docs/api/combine_labels.rst → documentation/api/combine_labels.rst b/documentation/docs/api/combine_labels.rst → documentation/api/combine_labels.rst
diff --git a/...mentation/docs/api/feature_extraction.rst → documentation/api/feature_extraction.rst b/...mentation/docs/api/feature_extraction.rst → documentation/api/feature_extraction.rst
diff --git a/documentation/docs/api/good_style.rst → documentation/api/good_style.rst b/documentation/docs/api/good_style.rst → documentation/api/good_style.rst
diff --git a/documentation/docs/api/labelCNN.rst → documentation/api/labelCNN.rst b/documentation/docs/api/labelCNN.rst → documentation/api/labelCNN.rst
diff --git a/documentation/docs/api/label_app.rst → documentation/api/label_app.rst b/documentation/docs/api/label_app.rst → documentation/api/label_app.rst
diff --git a/documentation/docs/api/measure_agreement.rst → documentation/api/measure_agreement.rst b/documentation/docs/api/measure_agreement.rst → documentation/api/measure_agreement.rst
diff --git a/documentation/docs/api/modules.rst → documentation/api/modules.rst b/documentation/docs/api/modules.rst → documentation/api/modules.rst
diff --git a/documentation/docs/api/pipeline.rst → documentation/api/pipeline.rst b/documentation/docs/api/pipeline.rst → documentation/api/pipeline.rst
diff --git a/...entation/docs/api/plot_agreement_data.rst → documentation/api/plot_agreement_data.rst b/...entation/docs/api/plot_agreement_data.rst → documentation/api/plot_agreement_data.rst
diff --git a/documentation/docs/api_docs.rst → documentation/api_docs.rst b/documentation/docs/api_docs.rst → documentation/api_docs.rst
diff --git a/documentation/docs/conf.py → documentation/conf.py b/documentation/docs/conf.py → documentation/conf.py
diff --git a/documentation/docs/index.rst → documentation/index.rst b/documentation/docs/index.rst → documentation/index.rst
diff --git a/documentation/docs/labelapp_linux.yml → documentation/labelapp_linux.yml b/documentation/docs/labelapp_linux.yml → documentation/labelapp_linux.yml
diff --git a/documentation/docs/make.bat → documentation/make.bat b/documentation/docs/make.bat → documentation/make.bat
diff --git a/documentation/docs/manual_CONDA.md → documentation/manual_CONDA.md b/documentation/docs/manual_CONDA.md → documentation/manual_CONDA.md
diff --git a/...rocessing/CreateDataSet/manual_dataSet.md → documentation/manual_dataSet.md b/...rocessing/CreateDataSet/manual_dataSet.md → documentation/manual_dataSet.md
diff --git a/documentation/docs/manual_how_to_label.md → documentation/manual_how_to_label.md b/documentation/docs/manual_how_to_label.md → documentation/manual_how_to_label.md
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diff --git a/...on/docs/manual_run_labelapp_externally.md → ...ntation/manual_run_labelapp_externally.md b/...on/docs/manual_run_labelapp_externally.md → ...ntation/manual_run_labelapp_externally.md
diff --git a/...entation/docs/manual_run_streamlit_app.md → documentation/manual_run_streamlit_app.md b/...entation/docs/manual_run_streamlit_app.md → documentation/manual_run_streamlit_app.md
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diff --git a/documentation/docs/protocols.rst → documentation/protocols.rst b/documentation/docs/protocols.rst → documentation/protocols.rst
diff --git a/...ation/docs/protocols/protocol_19_04_08.md → documentation/protocols/protocol_19_04_08.md b/...ation/docs/protocols/protocol_19_04_08.md → documentation/protocols/protocol_19_04_08.md
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