a lot movement

CogSciUOS · Apr 28, 2020 · d96d315 · d96d315
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diff --git a/README.md b/README.md
@@ -1,6 +1,5 @@
 # Asparagus classification project
 
-
 We are a study project of Osnabrueck University that is interested in Computer Vision. With this project we want to improve the performance of an asparagus sorting machine. The repository shows how we classify images of asparagus with Machine Learning methods.
 
 
@@ -11,19 +10,19 @@ You can find in this repository:
     -   Protocols
     -   Paper Library
     -   Report
--   Preprocess
+-   Preprocessing
     -   Labeling
-        - Labeling Application
-        - Kappa Agreement
-        - Annotations 
-    - Data Sets 
+    -   Labeling Application
+    -   Kappa Agreement
+    -   Annotations 
+    -   Data Sets 
 -   Classification
-    - Pipeline
-    - Unsupervised Learning
-    - Semi-Supervised Learning
-    - Supervised Learning
+    -   Pipeline
+    -   Unsupervised Learning
+    -   Semi-Supervised Learning
+    -   Supervised Learning
 -   Evaluation
-    Images
+-   Images
 -   Service
 
 

diff --git a/classification/sortImages.py b/classification/sortImages.py
diff --git a/documentation/docs/Asparagus RoadMap actual.xlsx b/documentation/docs/Asparagus RoadMap actual.xlsx
diff --git a/classification/notebooks/check_violet.ipynb → notebooks/check_violet.ipynb b/classification/notebooks/check_violet.ipynb → notebooks/check_violet.ipynb
diff --git a/...n/notebooks/data_augmentation_logic.ipynb → notebooks/data_augmentation_logic.ipynb b/...n/notebooks/data_augmentation_logic.ipynb → notebooks/data_augmentation_logic.ipynb
diff --git a/...tion/notebooks/evaluate_auto_violet.ipynb → notebooks/evaluate_auto_violet.ipynb b/...tion/notebooks/evaluate_auto_violet.ipynb → notebooks/evaluate_auto_violet.ipynb
diff --git a/.../notebooks/manual_feature_extractor.ipynb → notebooks/manual_feature_extractor.ipynb b/.../notebooks/manual_feature_extractor.ipynb → notebooks/manual_feature_extractor.ipynb
diff --git a/...cation/notebooks/quantify_curvature.ipynb → notebooks/quantify_curvature.ipynb b/...cation/notebooks/quantify_curvature.ipynb → notebooks/quantify_curvature.ipynb
diff --git a/classification/notebooks/rust.ipynb → notebooks/rust.ipynb b/classification/notebooks/rust.ipynb → notebooks/rust.ipynb
diff --git a/.../notebooks/verify_manual_extraction.ipynb → notebooks/verify_manual_extraction.ipynb b/.../notebooks/verify_manual_extraction.ipynb → notebooks/verify_manual_extraction.ipynb
diff --git a/CreateDataSet/CreateDataset.py → preprocessing/CreateDataSet/CreateDataset.py b/CreateDataSet/CreateDataset.py → preprocessing/CreateDataSet/CreateDataset.py
diff --git a/CreateDataSet/manual_dataSet.md → ...rocessing/CreateDataSet/manual_dataSet.md b/CreateDataSet/manual_dataSet.md → ...rocessing/CreateDataSet/manual_dataSet.md
diff --git a/CreateDataSet/overview.ipynb → preprocessing/CreateDataSet/overview.ipynb b/CreateDataSet/overview.ipynb → preprocessing/CreateDataSet/overview.ipynb
diff --git a/preprocess/Untitled.ipynb → preprocessing/Untitled.ipynb b/preprocess/Untitled.ipynb → preprocessing/Untitled.ipynb
diff --git a/...ed_feature_extraction/extract_features.py → ...ed_feature_extraction/extract_features.py b/...ed_feature_extraction/extract_features.py → ...ed_feature_extraction/extract_features.py
diff --git a/...ture_extraction/extract_features_local.py → ...ture_extraction/extract_features_local.py b/...ture_extraction/extract_features_local.py → ...ture_extraction/extract_features_local.py
diff --git a/advanced_feature_extraction/grid.py → ...ssing/advanced_feature_extraction/grid.py b/advanced_feature_extraction/grid.py → ...ssing/advanced_feature_extraction/grid.py
diff --git a/classification/agreement_measures.py → preprocessing/agreement_measures.py b/classification/agreement_measures.py → preprocessing/agreement_measures.py
diff --git a/classification/all_label_files.csv → preprocessing/all_label_files.csv b/classification/all_label_files.csv → preprocessing/all_label_files.csv
diff --git a/assemble_dataset/assemble_dataset.py → ...sing/assemble_dataset/assemble_dataset.py b/assemble_dataset/assemble_dataset.py → ...sing/assemble_dataset/assemble_dataset.py
diff --git a/assemble_dataset/labels.csv → preprocessing/assemble_dataset/labels.csv b/assemble_dataset/labels.csv → preprocessing/assemble_dataset/labels.csv
diff --git a/...dataset/test_files/josefine_0500_0999.csv → ...dataset/test_files/josefine_0500_0999.csv b/...dataset/test_files/josefine_0500_0999.csv → ...dataset/test_files/josefine_0500_0999.csv
diff --git a/...le_dataset/test_files/katha_1000_1499.csv → ...le_dataset/test_files/katha_1000_1499.csv b/...le_dataset/test_files/katha_1000_1499.csv → ...le_dataset/test_files/katha_1000_1499.csv
diff --git a/...le_dataset/test_files/malin_2500_2999.csv → ...le_dataset/test_files/malin_2500_2999.csv b/...le_dataset/test_files/malin_2500_2999.csv → ...le_dataset/test_files/malin_2500_2999.csv
diff --git a/..._dataset/test_files/michael_4500_4999.csv → ..._dataset/test_files/michael_4500_4999.csv b/..._dataset/test_files/michael_4500_4999.csv → ..._dataset/test_files/michael_4500_4999.csv
diff --git a/..._dataset/test_files/richard_5000_5999.csv → ..._dataset/test_files/richard_5000_5999.csv b/..._dataset/test_files/richard_5000_5999.csv → ..._dataset/test_files/richard_5000_5999.csv
diff --git a/assemble_dataset/test_labels.csv → ...ocessing/assemble_dataset/test_labels.csv b/assemble_dataset/test_labels.csv → ...ocessing/assemble_dataset/test_labels.csv
diff --git a/classification/combine_labels.py → preprocessing/combine_labels.py b/classification/combine_labels.py → preprocessing/combine_labels.py
diff --git a/get_data/combine_npy_files.py → preprocessing/combine_npy_files.py b/get_data/combine_npy_files.py → preprocessing/combine_npy_files.py
diff --git a/preprocess/echo.py → preprocessing/echo.py b/preprocess/echo.py → preprocessing/echo.py
diff --git a/classification/feature_extraction.py → preprocessing/feature_extraction.py b/classification/feature_extraction.py → preprocessing/feature_extraction.py
diff --git a/preprocess/combine_npy_files.py → preprocessing/get_data/combine_npy_files.py b/preprocess/combine_npy_files.py → preprocessing/get_data/combine_npy_files.py
diff --git a/get_data/combined_new.csv → preprocessing/get_data/combined_new.csv b/get_data/combined_new.csv → preprocessing/get_data/combined_new.csv
diff --git a/get_data/grid.py → preprocessing/get_data/grid.py b/get_data/grid.py → preprocessing/get_data/grid.py
diff --git a/get_data/move_files.py → preprocessing/get_data/move_files.py b/get_data/move_files.py → preprocessing/get_data/move_files.py
diff --git a/get_data/multilabel_model1.py → preprocessing/get_data/multilabel_model1.py b/get_data/multilabel_model1.py → preprocessing/get_data/multilabel_model1.py
diff --git a/get_data/stack_images.py → preprocessing/get_data/stack_images.py b/get_data/stack_images.py → preprocessing/get_data/stack_images.py
diff --git a/get_data/submit_combine.py → preprocessing/get_data/submit_combine.py b/get_data/submit_combine.py → preprocessing/get_data/submit_combine.py
diff --git a/get_data/submit_model.py → preprocessing/get_data/submit_model.py b/get_data/submit_model.py → preprocessing/get_data/submit_model.py
diff --git a/get_data/submit_move_files.py → preprocessing/get_data/submit_move_files.py b/get_data/submit_move_files.py → preprocessing/get_data/submit_move_files.py
diff --git a/get_data/submit_stack_images.py → ...rocessing/get_data/submit_stack_images.py b/get_data/submit_stack_images.py → ...rocessing/get_data/submit_stack_images.py
diff --git a/preprocess/get_valid_triples.py → preprocessing/get_valid_triples.py b/preprocess/get_valid_triples.py → preprocessing/get_valid_triples.py
diff --git a/...ssistant/feature_extraction/color_plot.py → ...ssistant/feature_extraction/color_plot.py b/...ssistant/feature_extraction/color_plot.py → ...ssistant/feature_extraction/color_plot.py
diff --git a/.../feature_extraction/feature_extraction.py → .../feature_extraction/feature_extraction.py b/.../feature_extraction/feature_extraction.py → .../feature_extraction/feature_extraction.py
diff --git a/...bel_assistant/feature_extraction/utils.py → ...bel_assistant/feature_extraction/utils.py b/...bel_assistant/feature_extraction/utils.py → ...bel_assistant/feature_extraction/utils.py
diff --git a/...tion/hand_label_assistant/imagedisplay.py → ...sing/hand_label_assistant/imagedisplay.py b/...tion/hand_label_assistant/imagedisplay.py → ...sing/hand_label_assistant/imagedisplay.py
diff --git a/...tion/hand_label_assistant/label_dialog.py → ...sing/hand_label_assistant/label_dialog.py b/...tion/hand_label_assistant/label_dialog.py → ...sing/hand_label_assistant/label_dialog.py
diff --git a/...tion/hand_label_assistant/label_dialog.ui → ...sing/hand_label_assistant/label_dialog.ui b/...tion/hand_label_assistant/label_dialog.ui → ...sing/hand_label_assistant/label_dialog.ui
diff --git a/...n/hand_label_assistant/label_dialog_ui.py → ...g/hand_label_assistant/label_dialog_ui.py b/...n/hand_label_assistant/label_dialog_ui.py → ...g/hand_label_assistant/label_dialog_ui.py
diff --git a/classification/hand_label_assistant/main.py → preprocessing/hand_label_assistant/main.py b/classification/hand_label_assistant/main.py → preprocessing/hand_label_assistant/main.py
diff --git a/...ification/hand_label_assistant/main_ui.py → ...rocessing/hand_label_assistant/main_ui.py b/...ification/hand_label_assistant/main_ui.py → ...rocessing/hand_label_assistant/main_ui.py
diff --git a/...ification/hand_label_assistant/main_ui.ui → ...rocessing/hand_label_assistant/main_ui.ui b/...ification/hand_label_assistant/main_ui.ui → ...rocessing/hand_label_assistant/main_ui.ui
diff --git a/...tion/hand_label_assistant/pandas_model.py → ...sing/hand_label_assistant/pandas_model.py b/...tion/hand_label_assistant/pandas_model.py → ...sing/hand_label_assistant/pandas_model.py
diff --git a/...sistant/start_aspargus_classification.bat → ...sistant/start_aspargus_classification.bat b/...sistant/start_aspargus_classification.bat → ...sistant/start_aspargus_classification.bat
diff --git a/classification/image.csv → preprocessing/image.csv b/classification/image.csv → preprocessing/image.csv
diff --git a/...sification/kappa_data/feature_to_label.py → preprocessing/kappa_data/feature_to_label.py b/...sification/kappa_data/feature_to_label.py → preprocessing/kappa_data/feature_to_label.py
diff --git a/classification/label_app.py → preprocessing/label_app.py b/classification/label_app.py → preprocessing/label_app.py
diff --git a/...nt_1/agreement_josefine_malin_1a_anna.csv → ...nt_1/agreement_josefine_malin_1a_anna.csv b/...nt_1/agreement_josefine_malin_1a_anna.csv → ...nt_1/agreement_josefine_malin_1a_anna.csv
diff --git a/..._1/agreement_josefine_malin_1a_violet.csv → ..._1/agreement_josefine_malin_1a_violet.csv b/..._1/agreement_josefine_malin_1a_violet.csv → ..._1/agreement_josefine_malin_1a_violet.csv
diff --git a/...ent_1/agreement_josefine_maren_koepfe.csv → ...ent_1/agreement_josefine_maren_koepfe.csv b/...ent_1/agreement_josefine_maren_koepfe.csv → ...ent_1/agreement_josefine_maren_koepfe.csv
diff --git a/...ement_1/agreement_josefine_maren_rost.csv → ...ement_1/agreement_josefine_maren_rost.csv b/...ement_1/agreement_josefine_maren_rost.csv → ...ement_1/agreement_josefine_maren_rost.csv
diff --git a/...nt_1/agreement_malin_josefine_1a_anna.csv → ...nt_1/agreement_malin_josefine_1a_anna.csv b/...nt_1/agreement_malin_josefine_1a_anna.csv → ...nt_1/agreement_malin_josefine_1a_anna.csv
diff --git a/...ement_1/agreement_malin_maren_1a_bona.csv → ...ement_1/agreement_malin_maren_1a_bona.csv b/...ement_1/agreement_malin_maren_1a_bona.csv → ...ement_1/agreement_malin_maren_1a_bona.csv
diff --git a/...ement_1/agreement_malin_michael_dicke.csv → ...ement_1/agreement_malin_michael_dicke.csv b/...ement_1/agreement_malin_michael_dicke.csv → ...ement_1/agreement_malin_michael_dicke.csv
diff --git a/...eement_1/agreement_malin_sophia_blume.csv → ...eement_1/agreement_malin_sophia_blume.csv b/...eement_1/agreement_malin_sophia_blume.csv → ...eement_1/agreement_malin_sophia_blume.csv
diff --git a/...eement_1/agreement_malin_sophia_hohle.csv → ...eement_1/agreement_malin_sophia_hohle.csv b/...eement_1/agreement_malin_sophia_hohle.csv → ...eement_1/agreement_malin_sophia_hohle.csv
diff --git a/..._agreement_1/agreement_maren_malin_2a.csv → ..._agreement_1/agreement_maren_malin_2a.csv b/..._agreement_1/agreement_maren_malin_2a.csv → ..._agreement_1/agreement_maren_malin_2a.csv
diff --git a/...ement_1/agreement_richard_josefine_2b.csv → ...ement_1/agreement_richard_josefine_2b.csv b/...ement_1/agreement_richard_josefine_2b.csv → ...ement_1/agreement_richard_josefine_2b.csv
diff --git a/...nt_1/agreement_richard_maren_1a_clara.csv → ...nt_1/agreement_richard_maren_1a_clara.csv b/...nt_1/agreement_richard_maren_1a_clara.csv → ...nt_1/agreement_richard_maren_1a_clara.csv
diff --git a/..._1/agreement_sophia_michael_1a_krumme.csv → ..._1/agreement_sophia_michael_1a_krumme.csv b/..._1/agreement_sophia_michael_1a_krumme.csv → ..._1/agreement_sophia_michael_1a_krumme.csv
diff --git a/...on_agreement_1/josefine_kappa_1A_Anna.csv → ...on_agreement_1/josefine_kappa_1A_Anna.csv b/...on_agreement_1/josefine_kappa_1A_Anna.csv → ...on_agreement_1/josefine_kappa_1A_Anna.csv
diff --git a/...agreement_1/josefine_kappa_1A_Violett.csv → ...agreement_1/josefine_kappa_1A_Violett.csv b/...agreement_1/josefine_kappa_1A_Violett.csv → ...agreement_1/josefine_kappa_1A_Violett.csv
diff --git a/...luation_agreement_1/josefine_kappa_2B.csv → ...luation_agreement_1/josefine_kappa_2B.csv b/...luation_agreement_1/josefine_kappa_2B.csv → ...luation_agreement_1/josefine_kappa_2B.csv
diff --git a/...ion_agreement_1/josefine_kappa_Koepfe.csv → ...ion_agreement_1/josefine_kappa_Koepfe.csv b/...ion_agreement_1/josefine_kappa_Koepfe.csv → ...ion_agreement_1/josefine_kappa_Koepfe.csv
diff --git a/...ation_agreement_1/josefine_kappa_Rost.csv → ...ation_agreement_1/josefine_kappa_Rost.csv b/...ation_agreement_1/josefine_kappa_Rost.csv → ...ation_agreement_1/josefine_kappa_Rost.csv
diff --git a/...ation_agreement_1/malin_kappa_1A_Anna.csv → ...ation_agreement_1/malin_kappa_1A_Anna.csv b/...ation_agreement_1/malin_kappa_1A_Anna.csv → ...ation_agreement_1/malin_kappa_1A_Anna.csv
diff --git a/...ation_agreement_1/malin_kappa_1A_Bona.csv → ...ation_agreement_1/malin_kappa_1A_Bona.csv b/...ation_agreement_1/malin_kappa_1A_Bona.csv → ...ation_agreement_1/malin_kappa_1A_Bona.csv
diff --git a/...on_agreement_1/malin_kappa_1A_Violett.csv → ...on_agreement_1/malin_kappa_1A_Violett.csv b/...on_agreement_1/malin_kappa_1A_Violett.csv → ...on_agreement_1/malin_kappa_1A_Violett.csv
diff --git a/...evaluation_agreement_1/malin_kappa_2A.csv → ...evaluation_agreement_1/malin_kappa_2A.csv b/...evaluation_agreement_1/malin_kappa_2A.csv → ...evaluation_agreement_1/malin_kappa_2A.csv
diff --git a/...luation_agreement_1/malin_kappa_Blume.csv → ...luation_agreement_1/malin_kappa_Blume.csv b/...luation_agreement_1/malin_kappa_Blume.csv → ...luation_agreement_1/malin_kappa_Blume.csv
diff --git a/...luation_agreement_1/malin_kappa_Dicke.csv → ...luation_agreement_1/malin_kappa_Dicke.csv b/...luation_agreement_1/malin_kappa_Dicke.csv → ...luation_agreement_1/malin_kappa_Dicke.csv
diff --git a/...luation_agreement_1/malin_kappa_Hohle.csv → ...luation_agreement_1/malin_kappa_Hohle.csv b/...luation_agreement_1/malin_kappa_Hohle.csv → ...luation_agreement_1/malin_kappa_Hohle.csv
diff --git a/...ation_agreement_1/maren_kappa_1A_Bona.csv → ...ation_agreement_1/maren_kappa_1A_Bona.csv b/...ation_agreement_1/maren_kappa_1A_Bona.csv → ...ation_agreement_1/maren_kappa_1A_Bona.csv
diff --git a/...tion_agreement_1/maren_kappa_1A_Clara.csv → ...tion_agreement_1/maren_kappa_1A_Clara.csv b/...tion_agreement_1/maren_kappa_1A_Clara.csv → ...tion_agreement_1/maren_kappa_1A_Clara.csv
diff --git a/...evaluation_agreement_1/maren_kappa_2A.csv → ...evaluation_agreement_1/maren_kappa_2A.csv b/...evaluation_agreement_1/maren_kappa_2A.csv → ...evaluation_agreement_1/maren_kappa_2A.csv
diff --git a/...uation_agreement_1/maren_kappa_Koepfe.csv → ...uation_agreement_1/maren_kappa_Koepfe.csv b/...uation_agreement_1/maren_kappa_Koepfe.csv → ...uation_agreement_1/maren_kappa_Koepfe.csv
diff --git a/...aluation_agreement_1/maren_kappa_Rost.csv → ...aluation_agreement_1/maren_kappa_Rost.csv b/...aluation_agreement_1/maren_kappa_Rost.csv → ...aluation_agreement_1/maren_kappa_Rost.csv
diff --git a/...n_agreement_1/michael_kappa_1A_Krumme.csv → ...n_agreement_1/michael_kappa_1A_Krumme.csv b/...n_agreement_1/michael_kappa_1A_Krumme.csv → ...n_agreement_1/michael_kappa_1A_Krumme.csv
diff --git a/...ation_agreement_1/michael_kappa_Dicke.csv → ...ation_agreement_1/michael_kappa_Dicke.csv b/...ation_agreement_1/michael_kappa_Dicke.csv → ...ation_agreement_1/michael_kappa_Dicke.csv
diff --git a/...ation_agreement_1/michael_kappa_Suppe.csv → ...ation_agreement_1/michael_kappa_Suppe.csv b/...ation_agreement_1/michael_kappa_Suppe.csv → ...ation_agreement_1/michael_kappa_Suppe.csv
diff --git a/...on_agreement_1/richard_kappa_1A_Clara.csv → ...on_agreement_1/richard_kappa_1A_Clara.csv b/...on_agreement_1/richard_kappa_1A_Clara.csv → ...on_agreement_1/richard_kappa_1A_Clara.csv
diff --git a/...aluation_agreement_1/richard_kappa_2B.csv → ...aluation_agreement_1/richard_kappa_2B.csv b/...aluation_agreement_1/richard_kappa_2B.csv → ...aluation_agreement_1/richard_kappa_2B.csv
diff --git a/...ation_agreement_1/richard_kappa_Suppe.csv → ...ation_agreement_1/richard_kappa_Suppe.csv b/...ation_agreement_1/richard_kappa_Suppe.csv → ...ation_agreement_1/richard_kappa_Suppe.csv
diff --git a/...on_agreement_1/sophia_kappa_1A_Krumme.csv → ...on_agreement_1/sophia_kappa_1A_Krumme.csv b/...on_agreement_1/sophia_kappa_1A_Krumme.csv → ...on_agreement_1/sophia_kappa_1A_Krumme.csv
diff --git a/...uation_agreement_1/sophia_kappa_Blume.csv → ...uation_agreement_1/sophia_kappa_Blume.csv b/...uation_agreement_1/sophia_kappa_Blume.csv → ...uation_agreement_1/sophia_kappa_Blume.csv
diff --git a/...uation_agreement_1/sophia_kappa_Hohle.csv → ...uation_agreement_1/sophia_kappa_Hohle.csv b/...uation_agreement_1/sophia_kappa_Hohle.csv → ...uation_agreement_1/sophia_kappa_Hohle.csv
diff --git a/...2/agreement_malin_katha_100278_100327.csv → ...2/agreement_malin_katha_100278_100327.csv b/...2/agreement_malin_katha_100278_100327.csv → ...2/agreement_malin_katha_100278_100327.csv
diff --git a/...2/agreement_maren_katha_100278_100327.csv → ...2/agreement_maren_katha_100278_100327.csv b/...2/agreement_maren_katha_100278_100327.csv → ...2/agreement_maren_katha_100278_100327.csv
diff --git a/...2/agreement_maren_malin_100278_100327.csv → ...2/agreement_maren_malin_100278_100327.csv b/...2/agreement_maren_malin_100278_100327.csv → ...2/agreement_maren_malin_100278_100327.csv
diff --git a/...valuation_agreement_2/agreement_plots.pdf → ...valuation_agreement_2/agreement_plots.pdf b/...valuation_agreement_2/agreement_plots.pdf → ...valuation_agreement_2/agreement_plots.pdf
diff --git a/.../agreement_sophia_katha_100278_100327.csv → .../agreement_sophia_katha_100278_100327.csv b/.../agreement_sophia_katha_100278_100327.csv → .../agreement_sophia_katha_100278_100327.csv
diff --git a/.../agreement_sophia_malin_100278_100327.csv → .../agreement_sophia_malin_100278_100327.csv b/.../agreement_sophia_malin_100278_100327.csv → .../agreement_sophia_malin_100278_100327.csv
diff --git a/.../agreement_sophia_maren_100278_100327.csv → .../agreement_sophia_maren_100278_100327.csv b/.../agreement_sophia_maren_100278_100327.csv → .../agreement_sophia_maren_100278_100327.csv
diff --git a/...ation_agreement_2/katha_100278_100327.csv → ...ation_agreement_2/katha_100278_100327.csv b/...ation_agreement_2/katha_100278_100327.csv → ...ation_agreement_2/katha_100278_100327.csv
diff --git a/...ation_agreement_2/malin_100278_100327.csv → ...ation_agreement_2/malin_100278_100327.csv b/...ation_agreement_2/malin_100278_100327.csv → ...ation_agreement_2/malin_100278_100327.csv
diff --git a/...ation_agreement_2/maren_100278_100327.csv → ...ation_agreement_2/maren_100278_100327.csv b/...ation_agreement_2/maren_100278_100327.csv → ...ation_agreement_2/maren_100278_100327.csv
diff --git a/...tion_agreement_2/sophia_100278_100327.csv → ...tion_agreement_2/sophia_100278_100327.csv b/...tion_agreement_2/sophia_100278_100327.csv → ...tion_agreement_2/sophia_100278_100327.csv
diff --git a/...late_structure_annotation/annotator_1.csv → ...late_structure_annotation/annotator_1.csv b/...late_structure_annotation/annotator_1.csv → ...late_structure_annotation/annotator_1.csv
diff --git a/classification/measure_agreement.py → preprocessing/measure_agreement.py b/classification/measure_agreement.py → preprocessing/measure_agreement.py
diff --git a/preprocess/move_files.py → preprocessing/move_files.py b/preprocess/move_files.py → preprocessing/move_files.py
diff --git a/...rocess/notebooks/check_violet-Copy1.ipynb → ...essing/notebooks/check_violet-Copy1.ipynb b/...rocess/notebooks/check_violet-Copy1.ipynb → ...essing/notebooks/check_violet-Copy1.ipynb
diff --git a/preprocess/notebooks/check_violet.ipynb → preprocessing/notebooks/check_violet.ipynb b/preprocess/notebooks/check_violet.ipynb → preprocessing/notebooks/check_violet.ipynb
diff --git a/...s/notebooks/data_augmentation_logic.ipynb → ...g/notebooks/data_augmentation_logic.ipynb b/...s/notebooks/data_augmentation_logic.ipynb → ...g/notebooks/data_augmentation_logic.ipynb
diff --git a/preprocess/notebooks/extractor.ipynb → preprocessing/notebooks/extractor.ipynb b/preprocess/notebooks/extractor.ipynb → preprocessing/notebooks/extractor.ipynb
diff --git a/.../notebooks/manual_feature_extractor.ipynb → .../notebooks/manual_feature_extractor.ipynb b/.../notebooks/manual_feature_extractor.ipynb → .../notebooks/manual_feature_extractor.ipynb
diff --git a/...rocess/notebooks/quantify_curvature.ipynb → ...essing/notebooks/quantify_curvature.ipynb b/...rocess/notebooks/quantify_curvature.ipynb → ...essing/notebooks/quantify_curvature.ipynb
diff --git a/preprocess/notebooks/width_extraction.ipynb → ...ocessing/notebooks/width_extraction.ipynb b/preprocess/notebooks/width_extraction.ipynb → ...ocessing/notebooks/width_extraction.ipynb
diff --git a/preprocess/perform_preprocessing.py → preprocessing/perform_preprocessing.py b/preprocess/perform_preprocessing.py → preprocessing/perform_preprocessing.py
diff --git a/classification/plot_agreement_data.py → preprocessing/plot_agreement_data.py b/classification/plot_agreement_data.py → preprocessing/plot_agreement_data.py
diff --git a/...ss/post_preprocess/downscale/downscale.py → ...ng/post_preprocess/downscale/downscale.py b/...ss/post_preprocess/downscale/downscale.py → ...ng/post_preprocess/downscale/downscale.py
diff --git a/...t_preprocess/downscale/downscale_local.py → ...t_preprocess/downscale/downscale_local.py b/...t_preprocess/downscale/downscale_local.py → ...t_preprocess/downscale/downscale_local.py
diff --git a/preprocess/post_preprocess/downscale/grid.py → ...cessing/post_preprocess/downscale/grid.py b/preprocess/post_preprocess/downscale/grid.py → ...cessing/post_preprocess/downscale/grid.py
diff --git a/...t_preprocess/obtain_color_palette/grid.py → ...t_preprocess/obtain_color_palette/grid.py b/...t_preprocess/obtain_color_palette/grid.py → ...t_preprocess/obtain_color_palette/grid.py
diff --git a/...ain_color_palette/obtain_color_palette.py → ...ain_color_palette/obtain_color_palette.py b/...ain_color_palette/obtain_color_palette.py → ...ain_color_palette/obtain_color_palette.py
diff --git a/...lor_palette/obtain_color_palette_local.py → ...lor_palette/obtain_color_palette_local.py b/...lor_palette/obtain_color_palette_local.py → ...lor_palette/obtain_color_palette_local.py
diff --git a/...cess/post_preprocess/sample_heads/grid.py → ...sing/post_preprocess/sample_heads/grid.py b/...cess/post_preprocess/sample_heads/grid.py → ...sing/post_preprocess/sample_heads/grid.py
diff --git a/...t_preprocess/sample_heads/sample_heads.py → ...t_preprocess/sample_heads/sample_heads.py b/...t_preprocess/sample_heads/sample_heads.py → ...t_preprocess/sample_heads/sample_heads.py
diff --git a/...rocess/sample_heads/sample_heads_local.py → ...rocess/sample_heads/sample_heads_local.py b/...rocess/sample_heads/sample_heads_local.py → ...rocess/sample_heads/sample_heads_local.py
diff --git a/...rocess/post_preprocess/to_palette/grid.py → ...essing/post_preprocess/to_palette/grid.py b/...rocess/post_preprocess/to_palette/grid.py → ...essing/post_preprocess/to_palette/grid.py
diff --git a/.../post_preprocess/to_palette/to_palette.py → .../post_preprocess/to_palette/to_palette.py b/.../post_preprocess/to_palette/to_palette.py → .../post_preprocess/to_palette/to_palette.py
diff --git a/...preprocess/to_palette/to_palette_local.py → ...preprocess/to_palette/to_palette_local.py b/...preprocess/to_palette/to_palette_local.py → ...preprocess/to_palette/to_palette_local.py
diff --git a/preprocess/preprocess.py → preprocessing/preprocess.py b/preprocess/preprocess.py → preprocessing/preprocess.py
diff --git a/preprocess/preprocess_BACKUP_1045.py → preprocessing/preprocess_BACKUP_1045.py b/preprocess/preprocess_BACKUP_1045.py → preprocessing/preprocess_BACKUP_1045.py
diff --git a/preprocess/preprocess_BASE_1045.py → preprocessing/preprocess_BASE_1045.py b/preprocess/preprocess_BASE_1045.py → preprocessing/preprocess_BASE_1045.py
diff --git a/preprocess/preprocess_LOCAL_1045.py → preprocessing/preprocess_LOCAL_1045.py b/preprocess/preprocess_LOCAL_1045.py → preprocessing/preprocess_LOCAL_1045.py
diff --git a/preprocess/preprocess_REMOTE_1045.py → preprocessing/preprocess_REMOTE_1045.py b/preprocess/preprocess_REMOTE_1045.py → preprocessing/preprocess_REMOTE_1045.py
diff --git a/preprocess/preprocess_locally.py → preprocessing/preprocess_locally.py b/preprocess/preprocess_locally.py → preprocessing/preprocess_locally.py
diff --git a/classification/preprocessor.py → preprocessing/preprocessor.py b/classification/preprocessor.py → preprocessing/preprocessor.py
diff --git a/classification/preprocessor_BACKUP_470.py → preprocessing/preprocessor_BACKUP_470.py b/classification/preprocessor_BACKUP_470.py → preprocessing/preprocessor_BACKUP_470.py
diff --git a/classification/preprocessor_BASE_470.py → preprocessing/preprocessor_BASE_470.py b/classification/preprocessor_BASE_470.py → preprocessing/preprocessor_BASE_470.py
diff --git a/classification/preprocessor_LOCAL_470.py → preprocessing/preprocessor_LOCAL_470.py b/classification/preprocessor_LOCAL_470.py → preprocessing/preprocessor_LOCAL_470.py
diff --git a/classification/preprocessor_REMOTE_470.py → preprocessing/preprocessor_REMOTE_470.py b/classification/preprocessor_REMOTE_470.py → preprocessing/preprocessor_REMOTE_470.py
diff --git a/preprocess/readme.txt → preprocessing/readme.txt b/preprocess/readme.txt → preprocessing/readme.txt
diff --git a/preprocess/stack_images.py → preprocessing/stack_images.py b/preprocess/stack_images.py → preprocessing/stack_images.py
diff --git a/preprocess/start_preprocessing.py → preprocessing/start_preprocessing.py b/preprocess/start_preprocessing.py → preprocessing/start_preprocessing.py
diff --git a/classification/start_preprocessing.py → preprocessing/start_preprocessing2.py b/classification/start_preprocessing.py → preprocessing/start_preprocessing2.py
diff --git a/preprocess/submit_script.py → preprocessing/submit_script.py b/preprocess/submit_script.py → preprocessing/submit_script.py
diff --git a/classification/utils.py → preprocessing/utils.py b/classification/utils.py → preprocessing/utils.py
diff --git a/classification/valid_names_kappa.py → preprocessing/valid_names_kappa.py b/classification/valid_names_kappa.py → preprocessing/valid_names_kappa.py