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docs: bump version #373

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ca84d0c
Merge pull request #353 from AllenNeuralDynamics/main
jtyoung84 Sep 25, 2025
38229d0
feat: remove mapping of targeted id to visual area and pull directly …
arielleleon Oct 6, 2025
1652a56
tests: fix resources
arielleleon Oct 6, 2025
eb9c231
Merge pull request #362 from AllenNeuralDynamics/pull-project-code-fr…
arielleleon Oct 6, 2025
cd1b74c
docs: bump version
arielleleon Oct 14, 2025
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2 changes: 1 addition & 1 deletion src/aind_metadata_mapper/__init__.py
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Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
"""Init package"""

__version__ = "0.29.0"
__version__ = "0.29.1"
14 changes: 1 addition & 13 deletions src/aind_metadata_mapper/mesoscope/session.py
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Original file line number Diff line number Diff line change
Expand Up @@ -27,16 +27,6 @@ class MesoscopeEtl(GenericEtl[JobSettings]):
"""Class to manage transforming mesoscope platform json and metadata into
a Session model."""

_STRUCTURE_LOOKUP_DICT = {
385: "VISp",
394: "VISam",
402: "VISal",
409: "VISl",
417: "VISrl",
533: "VISpm",
312782574: "VISli",
}

# TODO: Deprecate this constructor. Use GenericEtl constructor instead
def __init__(self, job_settings: Union[JobSettings, str]):
"""
Expand Down Expand Up @@ -240,9 +230,7 @@ def _transform(self, extracted_source: dict, meta: dict) -> Session:
magnification=self.job_settings.magnification,
fov_scale_factor=0.78,
imaging_depth=plane["targeted_depth"],
targeted_structure=self._STRUCTURE_LOOKUP_DICT[
plane["targeted_structure_id"]
],
targeted_structure=plane["targeted_structure_id"],
scanimage_roi_index=plane["scanimage_roi_index"],
fov_width=meta[0]["SI.hRoiManager.pixelsPerLine"],
fov_height=meta[0]["SI.hRoiManager.linesPerFrame"],
Expand Down
16 changes: 8 additions & 8 deletions tests/resources/mesoscope/example_movie_meta.json
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Original file line number Diff line number Diff line change
Expand Up @@ -175,7 +175,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.56,
"targeted_depth": 190,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 230,
"scanimage_power": 42,
Expand All @@ -196,7 +196,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.6,
"targeted_depth": 232,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 257,
"scanimage_power": 42,
Expand Down Expand Up @@ -224,7 +224,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.56,
"targeted_depth": 136,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 176,
"scanimage_power": 28,
Expand All @@ -245,7 +245,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.6,
"targeted_depth": 282,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 307,
"scanimage_power": 28,
Expand Down Expand Up @@ -273,7 +273,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.56,
"targeted_depth": 72,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 112,
"scanimage_power": 12,
Expand All @@ -294,7 +294,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.6,
"targeted_depth": 326,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 351,
"scanimage_power": 12,
Expand Down Expand Up @@ -322,7 +322,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.56,
"targeted_depth": 30,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 70,
"scanimage_power": 5,
Expand All @@ -343,7 +343,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.6,
"targeted_depth": 364,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 389,
"scanimage_power": 5,
Expand Down
16 changes: 8 additions & 8 deletions tests/resources/mesoscope/example_platform.json
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Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.56,
"targeted_depth": 190,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 230,
"scanimage_power": 42,
Expand All @@ -78,7 +78,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.6,
"targeted_depth": 232,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 257,
"scanimage_power": 42,
Expand Down Expand Up @@ -108,7 +108,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.56,
"targeted_depth": 136,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 176,
"scanimage_power": 28,
Expand All @@ -129,7 +129,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.6,
"targeted_depth": 282,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 307,
"scanimage_power": 28,
Expand Down Expand Up @@ -159,7 +159,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.56,
"targeted_depth": 72,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 112,
"scanimage_power": 12,
Expand All @@ -180,7 +180,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.6,
"targeted_depth": 326,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 351,
"scanimage_power": 12,
Expand Down Expand Up @@ -210,7 +210,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.56,
"targeted_depth": 30,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 70,
"scanimage_power": 5,
Expand All @@ -231,7 +231,7 @@
"targeted_x": -2015.51,
"targeted_y": -275.6,
"targeted_depth": 364,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 389,
"scanimage_power": 5,
Expand Down
16 changes: 8 additions & 8 deletions tests/resources/mesoscope/example_session_meta.json
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Original file line number Diff line number Diff line change
Expand Up @@ -180,7 +180,7 @@
"targeted_x": -672.96,
"targeted_y": -616.7,
"targeted_depth": 164,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 105,
"scanimage_power": 41,
Expand All @@ -201,7 +201,7 @@
"targeted_x": -672.96,
"targeted_y": -616.7,
"targeted_depth": 259,
"targeted_structure_id": 385,
"targeted_structure_id": "VISp",
"scanimage_roi_index": 0,
"scanimage_scanfield_z": 195,
"scanimage_power": 41,
Expand All @@ -228,7 +228,7 @@
"targeted_x": -1340.28,
"targeted_y": 617.08,
"targeted_depth": 159,
"targeted_structure_id": 402,
"targeted_structure_id": "VISal",
"scanimage_roi_index": 1,
"scanimage_scanfield_z": 116,
"scanimage_power": 41,
Expand All @@ -249,7 +249,7 @@
"targeted_x": -1340.28,
"targeted_y": 617.1,
"targeted_depth": 255,
"targeted_structure_id": 402,
"targeted_structure_id": "VISal",
"scanimage_roi_index": 1,
"scanimage_scanfield_z": 207,
"scanimage_power": 41,
Expand All @@ -276,7 +276,7 @@
"targeted_x": 758.15,
"targeted_y": -876.71,
"targeted_depth": 175,
"targeted_structure_id": 394,
"targeted_structure_id": "VISam",
"scanimage_roi_index": 2,
"scanimage_scanfield_z": 92,
"scanimage_power": 55,
Expand All @@ -297,7 +297,7 @@
"targeted_x": 758.15,
"targeted_y": -876.7,
"targeted_depth": 255,
"targeted_structure_id": 394,
"targeted_structure_id": "VISam",
"scanimage_roi_index": 2,
"scanimage_scanfield_z": 167,
"scanimage_power": 55,
Expand All @@ -324,7 +324,7 @@
"targeted_x": 107.36,
"targeted_y": -915.45,
"targeted_depth": 189,
"targeted_structure_id": 533,
"targeted_structure_id": "VISpm",
"scanimage_roi_index": 3,
"scanimage_scanfield_z": 112,
"scanimage_power": 50,
Expand All @@ -345,7 +345,7 @@
"targeted_x": 107.36,
"targeted_y": -915.4,
"targeted_depth": 265,
"targeted_structure_id": 533,
"targeted_structure_id": "VISpm",
"scanimage_roi_index": 3,
"scanimage_scanfield_z": 183,
"scanimage_power": 50,
Expand Down