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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 27 18

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 20 8

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 14 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 12 3

  5. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 9 3

  6. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 8

Repositories

Showing 10 of 533 repositories
  • aind-metadata-service Public

    REST API to compile metadata from various databases

    AllenNeuralDynamics/aind-metadata-service’s past year of commit activity
    Python 3 MIT 1 6 0 Updated Dec 8, 2025
  • aind-dft-ephys-analysis Public

    shared library for dynamic foraging task (DFT) - neuropixels analysis

    AllenNeuralDynamics/aind-dft-ephys-analysis’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 8, 2025
  • aind-data-transfer-lite Public

    A lightweight version of AIND Data Transfer Service.

    AllenNeuralDynamics/aind-data-transfer-lite’s past year of commit activity
    Python 0 MIT 0 6 0 Updated Dec 8, 2025
  • openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    AllenNeuralDynamics/openscope-community-predictive-processing’s past year of commit activity
    Python 14 MIT 13 31 1 Updated Dec 8, 2025
  • aind-mgi-service Public

    REST service to connect to MGI and return information.

    AllenNeuralDynamics/aind-mgi-service’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 8, 2025
  • aind-chat-query-builder Public

    LLM backed query builder agents for metadata and qc portal

    AllenNeuralDynamics/aind-chat-query-builder’s past year of commit activity
    Python 1 MIT 0 0 2 Updated Dec 8, 2025
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    AllenNeuralDynamics/aind-metadata-mapper’s past year of commit activity
    Python 0 MIT 2 50 (1 issue needs help) 6 Updated Dec 8, 2025
  • aind-exaspim-neuron-segmentation Public

    A Python package for performing neuron segmentation in large-scale image datasets.

    AllenNeuralDynamics/aind-exaspim-neuron-segmentation’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 1 Updated Dec 8, 2025
  • aind-fip-dff Public

    This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

    AllenNeuralDynamics/aind-fip-dff’s past year of commit activity
    Python 0 MIT 0 4 2 Updated Dec 8, 2025
  • AllenNeuralDynamics/HSFPpreprocess’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 8, 2025

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