Visualizer Refactor - #139

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RoboDoig wants to merge 106 commits into

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visualizer-refactor-staging

Commits on Jun 23, 2026

Update behavior plot to use Bonsai ImGui package style
RoboDoig
committed
91af860

Commits on Jun 26, 2026

Construct behavior visualizer with time based rolling graph
RoboDoig
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f31ffcc
Add trial choice / categorisation plotting
RoboDoig
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c98e327

Commits on Jun 30, 2026

Add extension class for trial categorization
RoboDoig
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9007b01
Update references to trial categories
RoboDoig
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16069d2
Another round of styling on behavior plot
RoboDoig
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6d13524
Add initial bias plot
RoboDoig
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90bf9c4
Create behaviour visualizer extension
RoboDoig
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6145c44
workflow reordering
RoboDoig
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ba6b85a
Save visualizers as extensions
RoboDoig
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f2d1222
Prototype metadata visualizer
RoboDoig
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217ad48
Fix ordering and add table outline styling
RoboDoig
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764c226

Commits on Jul 1, 2026

Integrate bias visualizer
RoboDoig
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e4c8a29
Remove redundant choice visualizer
RoboDoig
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59acda9
Initial test of refactored event visualizer
RoboDoig
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455efbf
Testing point plotters
RoboDoig
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6f01253

Commits on Jul 2, 2026

Blockout pre-session visualizer
RoboDoig
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32acf3e
Prototype for inter-session tab
RoboDoig
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fe5fe6e
Completed inter-session visualizer
RoboDoig
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ffcd432
Create IncludeWorkflow for metadata
RoboDoig
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b51a22b
Use reactive timestamps to revert to active software event display
RoboDoig
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692c590
Merge branch 'software-event-refactor' into feat/visualizer-refactor
RoboDoig
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4d6c2e6
Integrate ethogram into test workflow and finalize blockout
RoboDoig
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cbd011c
Group visualizer structure logic
RoboDoig
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cc086be
Add plot layout, context and behavior visualizer
RoboDoig
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9b22cda
Add bias visualizer
RoboDoig
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e2a98de
Integrate software event visualizer
RoboDoig
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ffb2b17
Integrate camera visualizer and update for Spinnaker frame input
RoboDoig
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7e31087
Integrate metadata visualizer and update with control subjects
RoboDoig
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0b05828
Integrate inter session visualizer and define ui controls
RoboDoig
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532bb2e
Update metadata visualizer control signal routing
RoboDoig
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4f2fb7e
Integrate pre-session visualizer
RoboDoig
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8c1d28a
Add remaining UI signal subjects
RoboDoig
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8fbad11

Commits on Jul 3, 2026

Populate ethogram event plotters
RoboDoig
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18a1ccf
Update behavior visualizer to plot metadata PReward
RoboDoig
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4b35fca

Commits on Jul 6, 2026

Commits on Jul 7, 2026

Add saturation visualizer / control to camera preview
RoboDoig
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0edc817

Commits on Jul 8, 2026

Add remaining manipulator control logic
RoboDoig
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abf1951
Add water manual overrides
RoboDoig
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5fd5f3d
Add Ui bump controls
RoboDoig
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52c7a85
And bump value
RoboDoig
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d2b27ee

Commits on Jul 13, 2026

Refactor camera visualizer to use named cameras
RoboDoig
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38efddd

Commits on Jul 14, 2026

forward/backward left/right should move individual l/r spouts
RoboDoig
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ca2c804
Fix typo in x position label
RoboDoig
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e37cfd6
Ensure right water shown in trial viz
RoboDoig
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08fe849
Fix inter/intra session typo
RoboDoig
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e35e817
Add not null filter to bias value in bias visualizer
RoboDoig
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14776db
Add an enableable imgui button control to extensions
RoboDoig
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d2c2470
Update water on cue buttons to be enabled/disabled according to auto
RoboDoig
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e6fb1a3
Save session visualizers as include workflows
RoboDoig
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93df5e1
Add flushing control to OutputControl
RoboDoig
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5a4c8b1

Commits on Jul 20, 2026

Ui logic for keep open left/right/both
RoboDoig
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c7682c9
Add operation control for holding valves open
RoboDoig
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186fe0d
Add output control for set open
RoboDoig
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8c4319c

Commits on Jul 21, 2026

Update presession visualizer with manipulator position feedback
RoboDoig
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f1d6fdf

Commits on Jul 28, 2026

Disable intra-session controls before experiment start
RoboDoig
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4e8489d

Commits on Jul 29, 2026

Initial session information visualizer
RoboDoig
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e845fc3
Update intra session visualizer as IncludeWorkflow
RoboDoig
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fd5ac52
Add additional null filtering to bias visualizer
RoboDoig
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f025941
Expose remaining subjects for intra session visualizer
RoboDoig
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a7af360
Add placeholder for session information
RoboDoig
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a0714d7
Fix flip for keep right/keep both open
RoboDoig
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b936dab
Refactor drain logic to be toggleable
RoboDoig
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367a05c
Add toggling for drain buttons
RoboDoig
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5b3762e
Update pre session visualizer IncludeWorkflow
RoboDoig
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7199ac3
Refactor keep open / drain logic
RoboDoig
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6c9df3b

Commits on Jul 30, 2026

Commits on Aug 5, 2026

Add placeholder text to avoid intra-session crash
RoboDoig
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cc60872
Add reset logic for draining buttons
RoboDoig
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e69696a
Externalise drain complete subjects for pre session visualizers
RoboDoig
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3d45784
Ensure that KeepOpen logic stays on indefinitely
RoboDoig
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4c0d1a2
Remove previous visualizers completely
RoboDoig
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abaff6f
Rename bonsai env folder to be in line with main
RoboDoig
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b1cb49c
Save visualizer implementation as IncludeWorkflow
RoboDoig
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f04defe
Remove redundant test workflows
RoboDoig
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875acf5
Merge branch 'main-integration' into visualizer-refactor-staging
RoboDoig
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92dcc26

Commits on Aug 7, 2026

fixes scheam and intrasession bugs
svc-aind-behavior
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6cfed3d

Commits on Aug 11, 2026

fixes keep right/left open
micahwoodard
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45e991c
changes logic to reward base in keep open
micahwoodard
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c2a7490
adds stage name to metadata bar
micahwoodard
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6563393

Commits on Aug 12, 2026

adds stage to metadata bar
micahwoodard
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2767cbd
uses trial index for bias
micahwoodard
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8eae7bc
removes end experiment subject to stop crashing
micahwoodard
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a7c9035
move legends in graphs
micahwoodard
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60f2927
fixes camera crashing
micahwoodard
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ec8e1e5

Commits on Aug 13, 2026

Merge branch 'main' into visualizer-refactor-staging
micahwoodard
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9fe0b66
allow none for metadata
micahwoodard
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6f90b8b
Merge branch 'main' into visualizer-refactor-staging
micahwoodard
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2db08d8

Commits on Aug 21, 2026

Initial outline for shader pass operator
RoboDoig
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05fae1b
Fix shader compilation method
RoboDoig
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95079ed
fixes quiescent software event misspelling
micahwoodard
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ee7980d

Commits on Aug 22, 2026

Working basic shader pass
RoboDoig
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495f781

Commits on Aug 24, 2026

Test with saturation overlay
RoboDoig
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906b05b
Implement uniform adjustment via property
RoboDoig
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d6c26ec
Implement adjustment of other uniforms
RoboDoig
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c485c1d
Refactor name of shader pass
RoboDoig
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a2f6a88

Commits on Aug 26, 2026

Update camera preview visualizer to use saturation shader pass
RoboDoig
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0a7dc36

Commits on Aug 27, 2026

Merge pull request #162 from AllenNeuralDynamics/shader-pass
RoboDoig
authored
1f7823b

Commits on Aug 28, 2026

fixes merge conflicts
micahwoodard
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5ecd91b